Psmi071382.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000027.1:17560724-17586825[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-08 6.3e-06 28.1 0.0 2 34 137 169 136 175 0.92 2 2 7e-08 1.9e-05 26.5 0.0 1 42 211 252 211 255 0.91
Sequence Information
- Coding Sequence
- ATGATATTCCAGTGGCAGCAACCAGAGGACAACATGAAATATATGGATATGATATGCACCTCTTGCATCTCTCGGTTACGCGATGCACTTGCCTTCAAAAGAGAAGTATTAGTGAGTGAAGAGGTGCTGCGTGAAAAACAAGATGaattaTTTCAATATACTACAGTGAAAGTGGAGAAACATGTAAAAGAGGAAGCAGAAGAAGAAGAAACTGAGTTTAAAGAAGTGGAATACTTAGAGATCACCGACAGTGTAAACAAAGATGAATTATATGAAGAACCTCTCTCAGATGGTAGGGTTTCAAAACAATGGCTGAGTTCAGATAGCTCTCTGCTGGTAGAACGTAAAAGAAAGTTGTCAAAAAAGCTCTCAAAGCAAGAGAGGAACAAAACATGCAAGCGGTATACTGCGGAGGAACTACAAATGGCCATTGATGCAGTCCAGAACAATGAAATGTCGCATGCAGAAGCGGCTGAGTGTTTTAATGTGCCCAGGCGAACTATCTCTGCTAAGATTCACAGTATTATAGACAAAGAAGAGGAACAATCGCAAAGTCCAGAAGGAAATCGTAAAAGAAAATGGCCGAAGAAACTACCaaataaagaaagaaacaaaACATACAAGCAGTATACCGAAAAGGCAATGAGAATGGCCATTGATGCTGTCCGGAAAAAAGGGATGTCACGTAGCGAAGCATCAGAGATGTTTAAGGTGCCTAAGAAGACTCTAGACGCTCGGCTTAGACTTCAGAATACTACTGTCAAAAACGAGGaaccagatgatgatgatgatgcatctAAAATAATAGACCAAGAAAAACACTACAAACTCATAGAGGAAATTAAATCAATACTTACCTATACAAATGCTCTACCATACAAATCCAAATTGACAAAGTACTACTGTGCATACTGCTCTACTGATGGACCAGCTTTTTATGACCCCGATGATTTGAGGATTCACACTAAAACGAAGCATGTCGATGATCGGACCAAAGGCATAGATCTCCTAATGAGACCACACTGGCAAAATGAGGTGTTAAAAATTGATATACATAGTCTCCATTGTACAGTTTGCTGTACAATCCTGCCGACTTGGAACACCATGTTCCGACATCTTGAAGATGTGCATGAGGTTGTTCTAGACGAGGCCTACAACAGAGTTATACCTTATATCCTCGCAAGGGAGCTGAAATGTGCTTTATGTGAAGATGCCTTTCCGAATTACCACACATTGGATGGACATATGAATGCCCATTACAGCAGTTACATTTGCTCCGAATGCGGCGATACTTTCTTATCAGCGAGCCGACTTAATAAACATTTGAGAGTACACAATACTGGGAGTTTCCCTTGCAAAGAATGCGGTAAAGTGTACAGTTTGAAGAGGTACTTGACAAAGCACTTTGACATGGTACATGGACAGAAGGACCAATACCAATGCTTATACTGTCCAGAAAGATTCTCCAGAACGTTCCAGCGACATCAGCATGTACTCAAAAAGCACAAAGAGACGGTCAAGATAAAGACTTGTGAGATCTGCGGAAAGATTTTCGACTGGATGCCCTACTACTGGGCTCACATGAGACGAAAGCATGGTAAAGAGAGGAATGCAAACAGTGTGACAAAAAATTCCTCATGA
- Protein Sequence
- MIFQWQQPEDNMKYMDMICTSCISRLRDALAFKREVLVSEEVLREKQDELFQYTTVKVEKHVKEEAEEEETEFKEVEYLEITDSVNKDELYEEPLSDGRVSKQWLSSDSSLLVERKRKLSKKLSKQERNKTCKRYTAEELQMAIDAVQNNEMSHAEAAECFNVPRRTISAKIHSIIDKEEEQSQSPEGNRKRKWPKKLPNKERNKTYKQYTEKAMRMAIDAVRKKGMSRSEASEMFKVPKKTLDARLRLQNTTVKNEEPDDDDDASKIIDQEKHYKLIEEIKSILTYTNALPYKSKLTKYYCAYCSTDGPAFYDPDDLRIHTKTKHVDDRTKGIDLLMRPHWQNEVLKIDIHSLHCTVCCTILPTWNTMFRHLEDVHEVVLDEAYNRVIPYILARELKCALCEDAFPNYHTLDGHMNAHYSSYICSECGDTFLSASRLNKHLRVHNTGSFPCKECGKVYSLKRYLTKHFDMVHGQKDQYQCLYCPERFSRTFQRHQHVLKKHKETVKIKTCEICGKIFDWMPYYWAHMRRKHGKERNANSVTKNSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158611;
- 90% Identity
- iTF_01160094;
- 80% Identity
- iTF_01160094;