Psmi048245.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000018.1:2935843-2974655[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-08 4.8e-06 28.5 0.0 4 39 187 223 184 227 0.88 2 4 3.2e-11 8.8e-09 37.2 0.3 2 39 239 276 238 279 0.92 3 4 1.5e-12 4e-10 41.5 0.1 4 45 296 338 293 338 0.95 4 4 1.3e-17 3.5e-15 57.7 0.0 1 43 345 388 345 389 0.96
Sequence Information
- Coding Sequence
- ATGTCTGGCTATGGATCATCTCAAGTAAAATGCGAACCCCCATCTGATGAAGAAGAAAGCAATTCCCAGTTCACACACGGTTACCAGCAATTCCCAGTTCATACACGGTCACATGAGcTCTCCTCACCAAACCTACTTGCGGTTAAAGTGGAAGCTATCGACGAGGTTAAGGAAAATGTATCATCACATATTTTACATCACCTGCAGGTGTCAGATGAGCTGGAGTTGACACCAGCTCCGGCCGCGCCCGCCGCCACGCCAGTGTGCGCGCGACCTGCCCCCCTACCTCGCACCTCCCCGGAAACACTGGAGACCCTCGAGCCCGCTCGTAATACACCGGGAACGACGCTTCTAGACAGACAGATGCAATTACTTGGCACCAGTGAAGAGGACTCGGACTTCGTGCCTTTGCTGCCCATTAAAGACGAGCCCTTGTCGGAGGGAGAACAACTACAGCTGAGTGATGAGGCGAGCGAAACCAGCGGAGTGGGAGTGGGGGGTGAAGGTGGGGAGGGGGAGGCGCGCAGCAGCCCCGGCAGCAAGGGTTGGGCGCCGCGCGACATGGAGTGCGCTCTGCAGGCCCTGCGAGACCGCCGCATGAGCCTCACCAAGGCGTCGGCGACATACGGCATTCCGTCCACAACGCTATGGCAGCGCGCGCACCGGTTGGGCATCGACACGCCGAAGAAGGACGGCGGCGCCAAGAGCTGGAGCGACGCAGACCTGCGTGCTGCACTACACGCACTGCGCGCCGGCGCGCTCTCCGCCAACAAGGCCAGCAAGGCTTACGGTATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGGCTGGCAGCTCCTTTCAACGCGGCGCCGACGTCCTGGCGCCGCAGCGACCTGCAGCACGCGCTCGCCGCCATTCGCTGCGGTGCTGCATCCGTGCAGCGCGCCGCCGCACAGTTCGGCATCCCCACCGGTACTCTATATGGAAGATGCAAACGAGAAGGTATCGAGCTATCTCGATCCAACCCTACGCCTTGGTCCGAAGACGCTATGGGTGAAGCGCTAGAAGCAGTAAGGGTGGGCCAAATGTCTATTAACCAGGCGGCGATACATTACAACTTGCCGTACTCCTCACTGTACGGCAGATTTAAGCGGTGTAAATATCAGCTGCAGggTCAACCGGTGCACCAATCAGAAAtggaaaaaaatatagaaatagatCATCAACACCAACATCAGGATCAAGAACCCTTCTCCTACCATTCTTTACCGCCTCACACTGATCCTAATACGTCGGACGATCAAACGAACGTTCTAATACCGTACAGCCAACTATTGAGTGAAGTCCACGATACCATGCACGGTCACATGGTATTGCAGGAGCAATATAGCGGGCAGGGACTTTATTACACGCAAGGTTATTACAGTGGTATGGCCACCAGTTGA
- Protein Sequence
- MSGYGSSQVKCEPPSDEEESNSQFTHGYQQFPVHTRSHELSSPNLLAVKVEAIDEVKENVSSHILHHLQVSDELELTPAPAAPAATPVCARPAPLPRTSPETLETLEPARNTPGTTLLDRQMQLLGTSEEDSDFVPLLPIKDEPLSEGEQLQLSDEASETSGVGVGGEGGEGEARSSPGSKGWAPRDMECALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGGAKSWSDADLRAALHALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRSDLQHALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQLQGQPVHQSEMEKNIEIDHQHQHQDQEPFSYHSLPPHTDPNTSDDQTNVLIPYSQLLSEVHDTMHGHMVLQEQYSGQGLYYTQGYYSGMATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157575;
- 90% Identity
- iTF_01157575;
- 80% Identity
- -