Porl017513.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000050.1:1644911-1674876[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.7e-09 3.8e-06 28.5 0.0 4 39 180 216 177 220 0.88 2 4 2.9e-11 1.7e-08 36.0 0.2 2 39 232 269 231 272 0.92 3 4 5.5e-13 3.2e-10 41.6 0.1 4 45 289 331 286 331 0.95 4 4 5e-18 2.8e-15 57.7 0.0 1 43 338 381 338 382 0.96
Sequence Information
- Coding Sequence
- ATGCCTGGCTACGGACCACCTCAAGTAAAATGCGAACCCCAATCTGATGGAGAAGAAAGCAATTCCCAGTTTACACATGGTTATCTGTCACATCAGTTCTCCTCATCAGAACTGCTTGCGGTTAAAGTGGAAGCTATCGACGAGGCCAAGGAAAATGTATCATCACATATTTTACATCACTTGCAGGTGCCTGAGGAGCTGGAGTTGACCCCGGCGCCGGCCGCGCCCGCCGCCACGCCGGTGTGCGCGCGGCCTGCCCCCCTGCCCCGCGCCTCCCCGGAAACGCTGGAGACGCTCGAGCCTGCCCGCAATACACCAGGAACGACGCTTCTAGACAGAGAGATGCAGTTACTTGGCACAAGTGAAGAGGACTCGGACTTCGtgccgctgctgcccattaaAGACGAGCCCTTGTCAGAGGGAGAACAACTGCAGTTGAGTGATGAGGCGAGCGAAACCAGTGGAGTGGGAGTGGGAGGTGAAGGTGGGGAGGGGGAGGCGCGTAGCAGCCCTGGAAGCAAGGGCTGGGCGCCGCGCGACATGGAGTGTGCGCTGCAAGCCCTGCGAGACCGTCGCATGAGCCTCACCAAGGCGTCGGCGACGTACGGCATTCCGTCCACAACGCTATGGCAGCGCGCGCACCGGTTGGGCATCGACACGCCAAAGAAGGACGGCGGCGCCAAGAGCTGGAGCGATGCAGACTTGCGCGCTGCGCTGCACGCCCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCTTACGGTATCCCGAGCAGCACCCTGTACAAGATAGCGCGGCGAGAGGGCATTCGGCTGGCGGCGCCTTTCAACGCAGCGCCGACGTCCTGGCGCCGAAGCGACCTGCAGCACGCGCTCGCCGCCATCCGCTGCGGCGCCGCGTCCGTGCAGCGCGCTGCCGCGCAGTTCGGCATCCCCACTGGTACTCTGTATGGAAGATGCAAACGAGAAGGTATCGAGTTATCTCGATCCAACCCTACGCCTTGGTCGGAAGACGCTATGGGGGAAGCGCTAGAGGCAGTGAGGGTCGGCCAAATGTCCATCAACCAAGCGGCAATACATTACAACTTGCCGTACTCCTCGTTGTACGGCAGATTTAAGCGGTGTAAATATCAGCTGCAGGGTCAATCAGTTCACCAATCAGAAATGcagaaaaatatagaaatagatCATCAACACCAACATCAGGATCAGGAACCCTTCTACCATTCTTTACCGACTCATGCTGATCCTAACACGTCGGACGATCAAACGAACGTTCAAATACCGTACAGTCAACTATTGAGTGAAGTCCACGATACCATGCACGGTCACATGGTACTGCAGGAGCAATATGGCGGGCAGGGGCTTTACTACATGCAAGGTTACTACAGTGGGATGGCCACCAGTTGA
- Protein Sequence
- MPGYGPPQVKCEPQSDGEESNSQFTHGYLSHQFSSSELLAVKVEAIDEAKENVSSHILHHLQVPEELELTPAPAAPAATPVCARPAPLPRASPETLETLEPARNTPGTTLLDREMQLLGTSEEDSDFVPLLPIKDEPLSEGEQLQLSDEASETSGVGVGGEGGEGEARSSPGSKGWAPRDMECALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGGAKSWSDADLRAALHALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRSDLQHALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQLQGQSVHQSEMQKNIEIDHQHQHQDQEPFYHSLPTHADPNTSDDQTNVQIPYSQLLSEVHDTMHGHMVLQEQYGGQGLYYMQGYYSGMATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158609;
- 90% Identity
- iTF_01158609;
- 80% Identity
- -