Porl005458.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- MBD-R2
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000012.1:765103-783846[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-16 4.3e-12 47.5 0.1 5 64 760 818 756 836 0.89 2 2 4.8 4e+04 -3.7 0.0 44 64 1147 1165 1147 1169 0.78
Sequence Information
- Coding Sequence
- ATGGCAGTTAAAAAGTGTTGTATTGAAAACTGCCACTCATGTTCAACTAGAAAAGAAGATAATGGTGTGACATATCACAAGTATCCTAAAGATTTATCTTTACGCGCCAAATGGATATCTGTTACACGGCACAAACACTTTGACGTAGGAACAACCTCATATGTGTGTTCCCGTCACTTTTGTAAAAGTGACTTCCAAGTTTACAAGGactctaaatatattttaaagtcagATGCTGTACCATCAATTTTTACTTGGGCTATAGAATCATCAAATATGGATTCCAATATAGCGAGTGTGCaatcaaatgaaaaaataaaagatttatcaTCAAGCAGTAAAGAGTCAGAACCTGAAAATTTAGAtgcaattaaaaagtttatagagGACCAAGAAAAAGAGATACAGGAGCAGAAATGTGAGGGTAAACATTCAATGTTAGAAGATCAAATTAATACAGACATGAGTCAAGTCAAAGAGGAACTTCCAGAGTGTAAAATGCAAGAGGAAACTTTAGCTGTAGCTGCTAGTGTAATGGACCTAATATTAAATGAATCAGAGACAAGAATCTTATCTAAAAAAGAAGACACAGAATGCCTTAGTGCTGCTAAAAGAggtaaTAGTAGtacagctttgacagttggttcTAAAGTTGAAGCAAAGGATTTTGGAGAATTTTGGTATCCAGCTCAAATTGTTGAGGTAGATTATGATGAGATGGAAGTATTGGTGCATTATGATAATGCTTCTAAAAAgcATGATGAATGGATAAACATCAGTAGTCCTAGGCTGCGACCATTCAGTAACAGTCCATCACAGTCAACAAGCCCTGTAACTAATGCAGAAACTGTAAAAGGCGAAACTAGCATAgtaaaagaagaaattaagcaAGAAGACAAATCTAAATTAAAGTTTGTAGTGGGAGAGAGGTGTTTGGCACGATGGAAAGATAATCGAAGATTTATGGCTACTGTAAATAAAGATTTAGGCAATGGCTcttatgaaattatatttgatgATGGCTTCCATTGGAAATGTACCACGTGCAGGCTGTATAAAGTAAAACAATCTTCAGAAAGAAATTCTCACCTTTTAACAGTTGATACATCCTCACCATCATCATCTTCCGCTTATCCTTCTCCTATTCCTTGTGGGGCTGGTCCTAGTAGTACTGTTGTAGGGTTAAATGATCCACAATTACCTGTTTTCCACACTCACCTCTTTGACCCAACCCGTGATTATTTAGGTTCAAAAAGCGAGCGTCGCGAGAAGAAACGcaagttaaatataaaagagaTATTTAATATTGGTCAAAAGAAGAGAAGAAAGCAAAAACCACAAGAGGATACGGATGACTTCGCGCCTAAACCGGTTAAACAGAGAAAACCTAGGGTGGtccaaaagaaaataaaagaagaaaatgataTTCAAGTGAAAACGGAAATAAAGAATGAAGTTCCTgatgCTGTAGCATCCATTATTGGTACGGTGGCAAAAGAAGAGTTAGTCATTAAGCAGGAAGTAATATTGGATGATGAAACTATAACTTCACTTAATGAACAGACAATACACAATCTTGATAGACTACCTCAAAATGTGGAAAATTATGAACAATTGAATGATTCAGGCAGAAATGATGAATCAGATATATCAGATACTAAAAACAGTACAGATCCAGTATTGGAAGAGGaaacaaaacttgaaaactttgAAATGATAGATGACCGAGAGCATGAGGAAGTTATTGATAGGATTAAAGAAGTTATTACCAAATTAGAAGATGGAATAAGTAAGGCAGAAAGAATAGAATCACCAAAGGTGGAAGTTAAAGAAGAGGAAAGCAATAATGTTAAAGAACATGAAGTAACCATTACTACAGATGAAAATAAAGAGCCAAAAGTAATACCCACTGGGGATTcagagaaaataaaaacagaactaAATGAAGGGAAGACTAAAAAAACAATGTCTAAattgaaaaaaagtaaaaagttgaGATTGATGCAGGAAAAAAAGGTTAAGAAGCAGGTGGAGAAAGTAAAAAGTGAATTAGAAGAGATGAAACGCCAGGTTGAAGAGATGAAGAAACAAATGTTATTAAAGACTGAAGTGTTATCTAGTCCTCAGCAGAAGCAAGAAATGCCAGAAAGCTTTCTGTTGCCTGGAGAGTGGTGCTGCAGATGGGTGAATGGACAACCAGTAGGAGCTGTGAGTGAAATAGAAAGTGAAGTTAAAGTTGATACAAACAGTAAGCCAGCTCTACCAAGACGAAGTGTTCAGGTTGAAGACAAACGGCTGCCTGAGGGATGGACAAAGCACATGGTACGACGGAGTTTCGGAAATTCAGCTGGAAAATGGGATGTTGTTTTAGTTAGTCCGGACAATCGACGCTTCCATACGAAAACGGACATGCGAAACTATCTCGAGCAAAATCCCAGCGAAGAACTCAAACAATACGAATATGCATTACTTGACTTCGGAGTTCATCTTAAACTCTCAAGACGTATGGGGTGGGTCACACAGACTGGTACAGAAGAGCCAGTCATTCCGCTCCCAGCCGGCTTGATGAGCAGTACATCACCTCTTGtgaaaagaaagaaattaaACCTGAATCGGGTAAAgggtattattaaaacaaaggaGAAGAAGAGAAGGTTGGGCGTGGGTGGCAAAATTAGAAGAATgCGTCATCGTGCTAATGATGTATTACCAGGGCCAAGTAACGTTGCCACAGATTTAGAACCGTTTGCCATGCATGCTGAAACTATTGACGACAATCCAACATTAGAAGATGGATAcgTCTATGTTGGGGCATTAAAAGttcaaattattgaaaatttattgcGCTGTCCGGCTGACGGTTGTTTAAAGAACTTCAGAAATAACACATTGTTAAAGATGCACATTAAACATTATCATAGGGAACTTAGGAAGAAGCTTGGTGCTACGCCAAAGGTCCTAGATTTAGCCTATGCTAGAACAAGACCTACAGAAGCAGAAATGAAAAGACAAAGAAACGAAACAGAGAGTAAAATCATAAAGGTAAAAATACCAAGACCTCCAAAACGCACTGAAGAATCAAAAATAGATATGAAAGAGCTCGATTCTGAACTTCAAGTGGATATACCGCTTTCACCTACCAAGaatgtagataatatttcaAAGGCTCAAGATTCCCCAAAATTGCGTAATGCGCTCGCAAACAAACCAGTGAAAAGACCTCGTGTCCTACTTCCTGTGAGAAGACCTGAGTTAGAAGTAACTGACAGAACAGAAGAAGTGGGATTGGACGTAAGAGGGAATACACCAGTTAATATACCAGAAGTTCAAGTATTAGATTTCGAAACTGCCATATCGACTCATACTGTCACAAAACCAGTCATTGATGGTAAAAGGAAAGGAGAGAAGAGGCGTAAAGGTTTCGCCTCATTTGCAAAGAGATCAATGAGTGAGGACGAGGAGTGGTTGACTATGAACTCCGACGTAGAGACAAGGTCCAGTTTTCCCGGTTCTGCGACACCGGATTCAAAGACAATGGATAATAAATCATATACTAATGCAGCTGCTTCATCAGAGTCCAACGAGGAACAGAAGGAATCGATGTATATGTACACTGAAAATGGCGAGCGGATAAAGATAGTTCAGATGAAACGTGAAGAGATTATAAATTGTCATTGCGGTTTCCGCGAGGAGGATGGCCTGATGGTGCAGTGTGAGCTATGCCTCTGCTGGCAGCATGCACTCTGTCACAACATACAAAAGGAGTCGGAGGTGCCGGACAAGTACACGTGCAGCATCTGCCTGAACCCGCGGCGCGGGCGGCGCTCGAAGCGGTTCGTGCACGACCAGGAGCGGCTGTACGAGGGCGCGCTGGCGGGCGCGCGGCCGTGCGACGCGCTGCGCCGCGCGCACGAGCTCGCCGCCAACCTGCTGCGCGCGCGCGACGCGCTGCACGCGCTGCGCGTCAAGTACCACGTCGCCACgataaagAATCAtccaaaattatatttgtggGCAAAAGACTGGGAGAATGCAGAGCTAAACATGACACAGGAGAAGTTGAACTCTGACTATTCAGACCTTAATATCATAATTAATAACATTGGGAAGGAGAACTTGCCATTGAAAACCGATGATATCCAAATGGATGTCCGTACGCCTTTATCTGAAGAAAATGATGAGAGATATAGCAACAGAGAACTTTCCCTTACCTCGCAAACTTTACTAAGTGGGGTGATGTCGAGTCCCGGTGGTGCATCTTTAGACCTACCTATTAGTACTACTGAGTTAGAAAGATTGGCGAAATCTGTTCAAGTGGCGGAGGGCGCGGTGCCGGCCCCGCAGCCCGAGGCGGCGATCGAGAACGGCGCGTGCCGCGAGCGCCTGCTGCGACACATCCAGCGCTGCCAGGCGCTCATCGACGCGCGCCTCGACTCCATAGAGGCGCAGGTCGCTGAGCTGGAATCCCAGGACCCCTCATTCGAAGATGATGAAACTGCGGACTATTTCCCTCGCACCAAACAGACTATTCAAATGCTGATGCGCGATCTGGATACTATGGAGGAGCTTGGAGTCATTACTTGA
- Protein Sequence
- MAVKKCCIENCHSCSTRKEDNGVTYHKYPKDLSLRAKWISVTRHKHFDVGTTSYVCSRHFCKSDFQVYKDSKYILKSDAVPSIFTWAIESSNMDSNIASVQSNEKIKDLSSSSKESEPENLDAIKKFIEDQEKEIQEQKCEGKHSMLEDQINTDMSQVKEELPECKMQEETLAVAASVMDLILNESETRILSKKEDTECLSAAKRGNSSTALTVGSKVEAKDFGEFWYPAQIVEVDYDEMEVLVHYDNASKKHDEWINISSPRLRPFSNSPSQSTSPVTNAETVKGETSIVKEEIKQEDKSKLKFVVGERCLARWKDNRRFMATVNKDLGNGSYEIIFDDGFHWKCTTCRLYKVKQSSERNSHLLTVDTSSPSSSSAYPSPIPCGAGPSSTVVGLNDPQLPVFHTHLFDPTRDYLGSKSERREKKRKLNIKEIFNIGQKKRRKQKPQEDTDDFAPKPVKQRKPRVVQKKIKEENDIQVKTEIKNEVPDAVASIIGTVAKEELVIKQEVILDDETITSLNEQTIHNLDRLPQNVENYEQLNDSGRNDESDISDTKNSTDPVLEEETKLENFEMIDDREHEEVIDRIKEVITKLEDGISKAERIESPKVEVKEEESNNVKEHEVTITTDENKEPKVIPTGDSEKIKTELNEGKTKKTMSKLKKSKKLRLMQEKKVKKQVEKVKSELEEMKRQVEEMKKQMLLKTEVLSSPQQKQEMPESFLLPGEWCCRWVNGQPVGAVSEIESEVKVDTNSKPALPRRSVQVEDKRLPEGWTKHMVRRSFGNSAGKWDVVLVSPDNRRFHTKTDMRNYLEQNPSEELKQYEYALLDFGVHLKLSRRMGWVTQTGTEEPVIPLPAGLMSSTSPLVKRKKLNLNRVKGIIKTKEKKRRLGVGGKIRRMRHRANDVLPGPSNVATDLEPFAMHAETIDDNPTLEDGYVYVGALKVQIIENLLRCPADGCLKNFRNNTLLKMHIKHYHRELRKKLGATPKVLDLAYARTRPTEAEMKRQRNETESKIIKVKIPRPPKRTEESKIDMKELDSELQVDIPLSPTKNVDNISKAQDSPKLRNALANKPVKRPRVLLPVRRPELEVTDRTEEVGLDVRGNTPVNIPEVQVLDFETAISTHTVTKPVIDGKRKGEKRRKGFASFAKRSMSEDEEWLTMNSDVETRSSFPGSATPDSKTMDNKSYTNAAASSESNEEQKESMYMYTENGERIKIVQMKREEIINCHCGFREEDGLMVQCELCLCWQHALCHNIQKESEVPDKYTCSICLNPRRGRRSKRFVHDQERLYEGALAGARPCDALRRAHELAANLLRARDALHALRVKYHVATIKNHPKLYLWAKDWENAELNMTQEKLNSDYSDLNIIINNIGKENLPLKTDDIQMDVRTPLSEENDERYSNRELSLTSQTLLSGVMSSPGGASLDLPISTTELERLAKSVQVAEGAVPAPQPEAAIENGACRERLLRHIQRCQALIDARLDSIEAQVAELESQDPSFEDDETADYFPRTKQTIQMLMRDLDTMEELGVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157864; iTF_01153998; iTF_01154055; iTF_01156471; iTF_01156562;
- 90% Identity
- iTF_01157864; iTF_01154055; iTF_01153998; iTF_01156471; iTF_01156562;
- 80% Identity
- iTF_01157864;