Pmne055280.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- MBD-R2
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000115.1:42585474-42604267[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-16 4e-12 47.5 0.0 5 64 758 816 754 850 0.90 2 2 3.2 3.8e+04 -3.7 0.0 44 64 1145 1163 1145 1167 0.78
Sequence Information
- Coding Sequence
- ATGGCAGTTAAAAAGTGTTGTATTGAAAACTGCCACTCATGTTCAACTAGAAAAGAAGATAAAGGTGTGACATATCACAAGTATCCTAAAGATTTATCTTTACGCACCAAATGGATATCTGTTACACGGCTCAAACACTTTGACGTAGGAACAACCTCATATGTGTGTTCCCGTCACTTTTGTAAAAGTGACTTCCAAGTTTACAAGgactctaaatatattttaaagtcaGATGCTGTACCATCAATTTTTACTTGGGCTATAGAATTATCAAATATGGATTCCAATATAGCAAATGCGCAATCAgttgaaaatataaaagatttatcATCAAGCAGTAAAGAGTCAGAACCTGAAAATTTAGATGCAATTAAAAAGTTTATAGAGGACCAAGAAAAAGAGATACAGGAGCAGAAATGTGAGGGTAAACATTCAATGTTAGAAGATCAAATTAATACAGACATGAGTCAAGTCAAAGAGGAACTTCCAGAGTGTAAAAAGCAAGAGGAAACTTTAGCTGTAGCCACTAGTGTAATGGACCTAATATTAAATGAATCAGAGACACGAATCTTATCTAAAAAAGAAGACACAGAATGCCTTAGTGCTGCTAAAAGAGgtaatagtacagctttgacagttggttctaaAGTTGAAGCAAAGGATTTTGGAGAATTTTGGTATCCAGCTCAAATTGTTGAGGTAGATTATGATGAGATGGAAGTATTGGTGCATTATGATAATGCTTCTAAAAAgcaTGATGAATGGATAAATATCAGTAGTCCTAGGCTGCGACCATTCAGTAACAGTCCATCACAGTCAATAAGCCCTGTGACTAATGCAGAAACTGTAAAAGGCGAAACTAGCATagtaaaagaagaaattaagCAAGAAGACAAACCTAAATTAAAGTTTGTAGTTGGAGAAAGGTGTTTGGCACGATGGAAAGATAATCGAAGATTTATGGCTACTGTAAATAAAGATTTAGGCAATGGCTCTTATGAAATTATATTTGATGATGGCTTCCATTGGAAATGTACCACATGCAGGCTGTATAAAGTAAAACAATCTTCAGAAAGAAATTCTGACCTTTTAACAGTTGATACATCCTCACCATCATCATCTTCCGCTTATCCTTCTCCTATTCCTTGTGGGGCTGGTCCTAGTAGTACTGTTGTAGGGTTAAATGATCCACAATTACCTATTTTCCACACTCACCTCTTTGACCCAACCCGTGATTATTTAGGTTCAAAAAGCGAGCGACGCGAGAAGAAACGCAAGTTAAATataaaagagatatttaatattgGTCAAAAGAAGAGAAGAAAGCAAAAACCACAAGAGGATACGAATGACTCCGCGCCTAAAACGGTTAAGCAGAGAAAACCTAGGGTGgtccaaaagaaaataaaagaagaaaatgacATGCAAGTGAAAAcggaaataaaaaatgaagttcctgatGCTGTAGCATCTATTATTGGTACGGTGGCGAAGGAAGAGTTGGTCATTAAGCAGGAAGTAATATTGGATGATGAAACTATAACTTCACTTAATGACCAGACAATACACAATCTTGATAGACTACCTCAAAATGTGGAAAATGATGAACAACTGAATGATTCAGGCAGAAATGATGAATCAGATATATCAGATACTAAAAACAGTATTGATCCAGTGTTGGAAGAGgaaacaaaacttgaaaacttTGAAATGATAGATGACCGAGAGCATGAGGAAGTTATTGATAGGATTAAAGAAGTTATTACCAAATTAGAAGATGGAATAAGTAAGGCAGAAAGAATAGAATCACCAAAGGTGGAAGTTAAAGAAGAGGAAAGCAAAAATGTTAAAGAACAAGAAGTAACCATTACTCCAGAAGAAAATAAAGAGGCGAACGTAATACCCGTTGGGGATTCAGAGAAAATAAAAACCGAACCAAATGAAGGGAAGATTAAAAAAATGTCTAAattgaaaaaaagtaaaaagttgaGATTGATGCAGGAAAAAAAGGTTAAGAAGCAGGTGGAGAAAGTAAAAAGTGAATTAGAAGAGATGAAACGCCAGGTTGAAGAGATGAAGaaacaaatgttattaaaaaCTGAAGTGTTATCTAGTCCTCAGCAGAAGCAAGAAATGCCAGAAAGCTTTTTATTGCCTGGAGAGTGGTGCTGCAGATGGGTGAATGGACAACCAGTGGGAGCTGTGAGTGAAATAGAAGGTGAAGTTAAAGTTGATGCAAACAGTAAGCCAGCTCTACCAAGACGAAGTGTTCAGGTTGAAGACAAACGGCTGCCTGAGGGATGGACAAAGCACATGGTACGACGGAGCTTCGGAAATTCAGCTGGAAAATGGGATGTTGTTTTAGTTAGTCCGGACAATCGACGCTTCCATACGAAAACGGACATGCGAAACTATCTCGAGCAAAATCCCAGTGAAGAACTCAAACAATACGAATATGCATTACTTGACTTCGGAGTTCATCTTAAACTCTCAAGACGTATGGGATGGGTCACGCAGACCGGTACAGAAGAGCCAGTCATTCCGCTCCCAGCCGGATTGATGAGCAGTACATCACCTCTcgtgaaaagaaaaaaattaagccTGAATCGGGTAAAGGGTATTATTAAAACAAAGCAGAAGAAGAGAAGGTTGGGCGTGGGTGGCAAAATTCGAAAAATGCGACATCGTGTTAATGATGTATTACCAGGGCCAAGTAACGTTGCAACAGATTTAGAACCGTTTGCCATGCACGCTGAAACTATTGACGACAATCCAACATTAGAAGATGGATAcgTCTATGTTGGGGCATTAAAAGTtcaaattattgaaaatttattGCGCTGTCCGGCTGACGGTTGTTTAAAGAACTTCAGAAATAACACATTGTTAAAGATGCACATAAAACATTATCATAGGGAACTTAGGAAGAAGCTTGGTGCTACGCCAAAGGTCCTAGATTTAGCCTATGCTAGAACAAAACCTACGGAAGCAGAAATGAAAAGACAAAGAAACGAAACAGAGAGTAAAATCATAAAGGTAAAAATACCAAGACCaccaaaacgcactgaagaatcAAAAATAGATATGAAAGAGCTTGATTCTGAACTTCAAGTGGATATACCGCTTTCACCTACCAAGAATGTAGATAATATTTCAAAGGCTCAAGATTCCCCAAAATTGCGTAATGCGCTCGCAAACAAACCAGTGAAAAGACCTCGTGTCCTACTTCCTGTGAGAAGACCCGAATCAGAAGTAACTGACAGAAGAGAAGAAGTGGGACTGGACGTAAGAGGGCATACACCAGTTAATATACCAGAAGTTCAAGTACTAGATTTCGAAACTGCCATATCGACTCATACTGTCACAAAACCAGTCGTAGATGGTAAAAGGAAAGGAGAGAAGAGGCGTAAAGGTTTCGCCTCATTTGCAAAAAGATCAATGAGTGAGGATGAAGAGTGGTTGACTATGAACTCCGACGTAGAGACAAGGTCCAGCTTTCCCGGTTCTGCGACACCGGATTCAAAGACAATGGATAATAAATCATATACTAATGCAGCTGCTTCATCAGAGTCCAACGAGGAACAGAAGGAATCGATGTATATGTACACTGAAAATGGCGAGCGCATAAAGATAGTTCAGATGAAACGTGAAGAGATTATAAATTGTCATTGCGGTTTCCGCGAGGAGGATGGCCTGATGGTGCAGTGTGAGCTATGCCTTTGCTGGCAGCATGCACTCTGTCACAACATACAAAAGGAGTCAGAGGTGCCGGACAAGTACACGTGCAGCATCTGCCTTAACCCGCGGCGCGGGCGGCGCTCGAAGAGGTTTCTGCACGACCAGGAGCGGCTGTACGAGGGCGCGCTGGCGGGCGCGCGGCCGAACGATGCGCTGCGCCGCGCGCACGAGCTCGCCGCCAACCTGCTGCGCGCGCGCGACGCGCTGCACGCACTGCGCGTCAAGTACCACGTCGCCACgaaaaagaatcatccaaaatTATATTTGTGGGCAAAAGACTGGGAGAATGCAGAGCTAAACATGACACAGGAGAAGTTGAACTCTGACTATTCAGACCTTAATATCACAATTAATAACATTGGGAAGGAGAACTTGCCATTGAAAACCGATGATATCCAAATGGATGTCCGTACGCCTTTATCTGAAGAAAATGATGAGAGATATAGCAACAGAGAACTTTCCCTTAACTCTCAAACCTTACTAAGTGGGGTGATGTCGAGTCCCGGTGGTGCATCTTTAGACCTACCTATTAGTACTACTGAGTTAGAACGATTGGCGAAATCTGTTCAAGCGGCGGAGGGCGCGGTGGCGGCTCCGCAGCCCGAGGCGGCGATCGAGAACGGCGCGTGCCGCGAGCGCCTGCTGCGCCACATCCAGCGCTGCCAGGCGCTCATCGACGCGCGCCTCGACTCCATAGAGGCGCAGGTCGCTGaGCTTGAATCCCAGGACCCCTCATTCGAAGATGATGAAACTGCGGACTATTTTCCTCGCACCAAGCAGACTATTCAAATGCTGATTCGCGATCTGGATACTATGGAGGAGCTTGGAGTCATTACTTGA
- Protein Sequence
- MAVKKCCIENCHSCSTRKEDKGVTYHKYPKDLSLRTKWISVTRLKHFDVGTTSYVCSRHFCKSDFQVYKDSKYILKSDAVPSIFTWAIELSNMDSNIANAQSVENIKDLSSSSKESEPENLDAIKKFIEDQEKEIQEQKCEGKHSMLEDQINTDMSQVKEELPECKKQEETLAVATSVMDLILNESETRILSKKEDTECLSAAKRGNSTALTVGSKVEAKDFGEFWYPAQIVEVDYDEMEVLVHYDNASKKHDEWINISSPRLRPFSNSPSQSISPVTNAETVKGETSIVKEEIKQEDKPKLKFVVGERCLARWKDNRRFMATVNKDLGNGSYEIIFDDGFHWKCTTCRLYKVKQSSERNSDLLTVDTSSPSSSSAYPSPIPCGAGPSSTVVGLNDPQLPIFHTHLFDPTRDYLGSKSERREKKRKLNIKEIFNIGQKKRRKQKPQEDTNDSAPKTVKQRKPRVVQKKIKEENDMQVKTEIKNEVPDAVASIIGTVAKEELVIKQEVILDDETITSLNDQTIHNLDRLPQNVENDEQLNDSGRNDESDISDTKNSIDPVLEEETKLENFEMIDDREHEEVIDRIKEVITKLEDGISKAERIESPKVEVKEEESKNVKEQEVTITPEENKEANVIPVGDSEKIKTEPNEGKIKKMSKLKKSKKLRLMQEKKVKKQVEKVKSELEEMKRQVEEMKKQMLLKTEVLSSPQQKQEMPESFLLPGEWCCRWVNGQPVGAVSEIEGEVKVDANSKPALPRRSVQVEDKRLPEGWTKHMVRRSFGNSAGKWDVVLVSPDNRRFHTKTDMRNYLEQNPSEELKQYEYALLDFGVHLKLSRRMGWVTQTGTEEPVIPLPAGLMSSTSPLVKRKKLSLNRVKGIIKTKQKKRRLGVGGKIRKMRHRVNDVLPGPSNVATDLEPFAMHAETIDDNPTLEDGYVYVGALKVQIIENLLRCPADGCLKNFRNNTLLKMHIKHYHRELRKKLGATPKVLDLAYARTKPTEAEMKRQRNETESKIIKVKIPRPPKRTEESKIDMKELDSELQVDIPLSPTKNVDNISKAQDSPKLRNALANKPVKRPRVLLPVRRPESEVTDRREEVGLDVRGHTPVNIPEVQVLDFETAISTHTVTKPVVDGKRKGEKRRKGFASFAKRSMSEDEEWLTMNSDVETRSSFPGSATPDSKTMDNKSYTNAAASSESNEEQKESMYMYTENGERIKIVQMKREEIINCHCGFREEDGLMVQCELCLCWQHALCHNIQKESEVPDKYTCSICLNPRRGRRSKRFLHDQERLYEGALAGARPNDALRRAHELAANLLRARDALHALRVKYHVATKKNHPKLYLWAKDWENAELNMTQEKLNSDYSDLNITINNIGKENLPLKTDDIQMDVRTPLSEENDERYSNRELSLNSQTLLSGVMSSPGGASLDLPISTTELERLAKSVQAAEGAVAAPQPEAAIENGACRERLLRHIQRCQALIDARLDSIEAQVAELESQDPSFEDDETADYFPRTKQTIQMLIRDLDTMEELGVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157807;
- 90% Identity
- iTF_01157807;
- 80% Identity
- iTF_01156562;