Pmne033968.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- nfxl1
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000086.1:36060386-36062860[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 7.3e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 19 0.13 4.6e+03 -0.3 0.4 4 10 169 175 168 175 0.95 3 19 3.1e-07 0.011 17.6 15.9 3 19 186 202 185 202 0.95 4 19 7e-07 0.025 16.5 16.2 3 19 239 255 227 255 0.91 5 19 1.6e-09 5.9e-05 24.9 11.7 1 19 290 308 290 308 0.98 6 19 1.6e-06 0.057 15.4 19.3 3 19 345 361 337 361 0.86 7 19 1.9 6.9e+04 -4.0 0.9 5 10 384 389 384 389 0.89 8 19 5.3e-06 0.19 13.7 18.3 1 18 395 412 395 413 0.97 9 19 2.9e-09 0.0001 24.1 15.8 1 19 422 440 422 440 0.98 10 19 2 7.3e+04 -7.1 5.0 15 19 470 474 469 474 0.80 11 19 0.00037 13 7.8 6.6 9 19 488 498 486 498 0.89 12 19 0.0021 76 5.4 8.7 1 12 508 518 508 518 0.96 13 19 0.31 1.1e+04 -1.5 3.5 14 18 547 551 547 552 0.87 14 19 0.48 1.7e+04 -2.1 1.3 8 12 568 572 567 579 0.79 15 19 0.0053 1.9e+02 4.1 5.0 1 11 588 598 582 599 0.91 16 19 0.69 2.5e+04 -2.6 1.4 15 18 613 616 612 617 0.83 17 19 0.00037 14 7.8 16.9 3 18 629 645 628 646 0.82 18 19 0.61 2.2e+04 -2.5 1.6 10 16 676 682 674 683 0.79 19 19 7.8e-05 2.8 10.0 10.9 1 16 687 701 687 706 0.93
Sequence Information
- Coding Sequence
- ATGGCACGTAGATATCGCGACGCTGctgcaaaattgcaacaaaatatacaaaagcatTTAAAGGAAATGAAGGAACTTTCATCGTCCGATGATGAAGAACCCTTTGAAACTAGCGTACTGGACGGTGTATTTCAAAGCTATTGGAGAGGCGGGGGCGACAAACAAATGCTAAATAGAACAAAAAATCTATTAGAAGAAGCCATAAGCGGTCGAAATATTACTTGTCTTATATGTATAGGGTCTATCAAACGAGCTCATGCCATATGGAATTGTGACCATTGCTACTCTTATTTTCACCTCTCTTGCATACAAAAGTGGGCGAACGACTGCGTGAGTCTTAAAAGCGATGAGACTCAAGGCCCTATTGCTGTTTTTGTTCCAAGAAAAGTTGAATGGTGTTGCCCGAAATGTAGACATTCATACAACAAAGAAGAAATTCCGCGTAAATACCGATGTTTCTGTGGCAAAACTGACAATCCTCCCCTTCACCCCTGGCTAATACCCCATTCCTGTGGTGAAATTTGTGAAAAAAGACTTTCATCAGGGAATCACTGTAAACATAAATGCCTTCTGCTCTGTCACCCTGGACCTTGCCCACCATGTCCGCAAATGGTTAATGGAGTTTGCTATTGTGAGAAAGAACATAAAAAAGTAAGATGTAGTACTGGAAGATGGTCTTGTGGACAACAATGTAAGCAAATCCTGCCATGTAAATCTCACATGTGTGAGAATGTTTGCCATGATGGTGACTGTCCTCCATGCAGTTATACAAGCTTACAACCATGTCAGTGTGGTGCTGAAAAAGTAAGACGTCCATGTAATGATTTAGAATGGCAATGTAGTAAGAAATGTAACAAGCCATTTTCATGTGGATACcataaatgtgaaaaaatatgCCATTCTGGTGACTGTGGATTATGTCCGAATTCCGGTTTAATGTCCTGCCCATGTGGGGCAAATCAACGGTATGTACAATGTCCGGATATAATGGAAACATGTTTAAGTACATGTGGTAAGAAACATGAAAACTGTGAACATAACTGCCCAGAAAAATGCCATAAAGGTCCATGTCCACCTTGTCAGGTTATGATTGAGAAGAAATGCCAATGCTCAACACACACTAGGGCACTACCCTGTAGTAAAGAATTCAAGTGTGACTCAAAGTGCAGGGGTACTCGCCCCTGTGGTAAACATGCATGTGGACGTAAATGTTGCAATGGTAACTGTCCACCATGTGAAAAAATTTGTGATAAGCCCTTACAGTGTGGCCGCCACAAATGCACCTCAGTTTGTCATCATGGTCCTTGTTATCCTTGTTCTAGGGAATCAAAAATAACATGTAGATGTAAAGAAACATACATCACTGTGCCTTGTGGcagagaaaaaaatataaaaccacCAAAATGCTGTCTCCCTTGTAAGATTAAATATAAATGTGGCCatatagaggaaaacaaacattCGTGCCATTTTGGTGAATGTCCGCCTTGCAAAGCTATATGCTTCAAGGCATACCAGAAATGTGGTCACCAGTGTAAAGCTACGTGCCACGAATATGTGACACTTGTATTTAAACAAGTGGAAAAACCTGCTACACCATGGGAGATACAGCCTCCAAAGTCTAAAGTAATGACATTAGATTGTCCTCCATGTGAAATGCCTGTGCCAGTAACTTGTTTTGGTGAACATGAGATAGAACATCAGCCATGTCATTCTGCATCTAGACGACCATGTGGCCGAGAATGTGGTCGCCCACTTGAATGCACTAATCATGCTTGTATTCTTCTCTGCCATTTATTTACTTACAATCCTGATTATCCCAATGTGCCTTATAAATGTAAGCCATGTGATAAAGAATGTTTGGCAGTCCGTCCAGAAAAGTGCACACATAAATGTGCAAAACGTGGTTGTCACCCTGGACCATGTCCTCCATGCGAATTATTTGAGCGCATCCGCTGTCATTGTGGTGTAACAGAACTTTATTTACGGTGTAGAGAGCTATCAACTGCAACCGAAGAAATGTTTTGTTGCCAGCAGCAATGTCCAAAGATGTTAGACTGTGGTCACAGATGTAAGAAACTATGTCATCCAGATCAGTGTAAAGAAAACCAAATTTGTTTGAAAAAGACAAAAGTGCACTGTAGTTGTGGTAATTTGAAGAAAGAAGCACCATGCAATGCGGTGCGAcaacaagaaataaaaattaattgtgacAACAGTTGTGAGGCTAAACAAGCTGCAGCAAAGATAGAGAGAGAAAGAGAAGAAAAGAGACTGAAAGAGCTAGAAGAAGAAAGAAACCGTAGAGAGTTGGCAGAATATGAGTGGAAGTTGAGTGGCAAAAAGAAGAAGTATAAGGAAAAGAAAGTGACCATTAATAGAGATGAAAGGAATTGGCTTCAAAAGTATTGGATTATCATTACATCTATAGTCGCTTTATTGATTGCATTCGTATACTAtgtattgtacatttaa
- Protein Sequence
- MARRYRDAAAKLQQNIQKHLKEMKELSSSDDEEPFETSVLDGVFQSYWRGGGDKQMLNRTKNLLEEAISGRNITCLICIGSIKRAHAIWNCDHCYSYFHLSCIQKWANDCVSLKSDETQGPIAVFVPRKVEWCCPKCRHSYNKEEIPRKYRCFCGKTDNPPLHPWLIPHSCGEICEKRLSSGNHCKHKCLLLCHPGPCPPCPQMVNGVCYCEKEHKKVRCSTGRWSCGQQCKQILPCKSHMCENVCHDGDCPPCSYTSLQPCQCGAEKVRRPCNDLEWQCSKKCNKPFSCGYHKCEKICHSGDCGLCPNSGLMSCPCGANQRYVQCPDIMETCLSTCGKKHENCEHNCPEKCHKGPCPPCQVMIEKKCQCSTHTRALPCSKEFKCDSKCRGTRPCGKHACGRKCCNGNCPPCEKICDKPLQCGRHKCTSVCHHGPCYPCSRESKITCRCKETYITVPCGREKNIKPPKCCLPCKIKYKCGHIEENKHSCHFGECPPCKAICFKAYQKCGHQCKATCHEYVTLVFKQVEKPATPWEIQPPKSKVMTLDCPPCEMPVPVTCFGEHEIEHQPCHSASRRPCGRECGRPLECTNHACILLCHLFTYNPDYPNVPYKCKPCDKECLAVRPEKCTHKCAKRGCHPGPCPPCELFERIRCHCGVTELYLRCRELSTATEEMFCCQQQCPKMLDCGHRCKKLCHPDQCKENQICLKKTKVHCSCGNLKKEAPCNAVRQQEIKINCDNSCEAKQAAAKIEREREEKRLKELEEERNRRELAEYEWKLSGKKKKYKEKKVTINRDERNWLQKYWIIITSIVALLIAFVYYVLYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154710;
- 90% Identity
- iTF_01160165;
- 80% Identity
- -