Pmne011733.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000035.1:41118912-41146838[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-77 6.5e-72 244.3 23.6 1 268 130 388 130 407 0.90 2 2 1 7.3e+04 -7.6 18.1 1 48 408 454 408 481 0.70
Sequence Information
- Coding Sequence
- ATGGGTAACAAAACGAAGCATACTACACCAGATAACAGTGATGAGGAAAGTGGAGACGCCTTCACCGATGGTGATTTCGGTGATTCCGATGAAGAGACAGTTGTAGAACGGTCAGATGTTTCTAAAGCTGGTCAATTGCCTGTCAATGAGACGGTAAACACCAGTGTCAGAACTGTAAATGATAGTGAAGTAAATGAAGAAACAGTATGTGTAACTAATGGAAATGGGGATGCTGAAGATAATACTGAAAATTTAGAAAATGGACACGGCTCTCACTCGGACGAGTTGGACAATTACGTGGATCTTGTCCTAACGGACGCACGAGACGATTCTTATAGCGAAATCAATCCGTCAATAGTTGGGATTCTCGGCGACCAGCACTCCCATGCTGAGCAGCGGCTGGCAGCGCGACGAGCAGCCCGCGCAGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGGACCATGCGGACAAAGCGTTCGACATGTACGCAGAGACGGTGGGACGACGAGGGGGTCGGCTAGCAGCACTGAGCCCGGCCATACATTCGCCGAGACGCAGTTCCGAGGACTCCGCCGATGACGTCTTCAGCATCAAAGACTTAAGGCACGAGCTGAAAGAGGTGGAGGAAAAGTTCCGCAAGGCGATGATCCTTAACGCGCAGCTGGACAACGACAAGGCGGCGCTTGGCTACCAGCTGGAACTGCTCAAAGACAGGATAGAAGAGCTACAAGAGGAACACGCACAGTTACAGCGGGAACACAAAGAGAAGTGCTCGGCACACGAGCGGCTAAAGCGCGAGCACTTGGCGCTGGAGCGCGAGGTGACGTGCGCGCGGGACGCGGTGCGCGCGCGCGACGCGGCGGCCGCGGCCGCGGGCTTCGCCTTCGTGGAGGCGGCCGACTGCGCAGACATGCCGCAGGGCTTCGGCAGCGTGCCGCCGCTCGCGCTCGTCTCGCACCACTCCGAGCAGCTGCTCAACGACGCCGGCGAGGGCACGCTGGATGTACGGTTGCAGAAATTGGTGAGTTCGAAGCAAGCATTGGAGTCAGAAGTGCGCAAACTGAAACTTAGTCTCAACGAGGAGCGTGCCGCGCGACAAAATGGAGTCGCATCGCTACATGAGCGCGAACACGACAGCGAACTGGAATCTTTACGCAAATCTGTGGCGGAGGCAAAGGGACGAGCTGCGCGGGCGGAGGCTGAAGCTGCGCTGCAAGCGGCCGCCGTGGCGCGTCTCGAGGCGCAGGTGGCCCGCCTGCGAGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGACGTCTGCAGCGCGAGGCAAGAGAAGCCCTCAATCGAGTGGAAGAATTGGAGACGGAGAATAGTCATCTGACAAAACGCCTTGACAAACTCAAGAACGCTAAATCCGCGCTCCTGAAAGAGCTGTGA
- Protein Sequence
- MGNKTKHTTPDNSDEESGDAFTDGDFGDSDEETVVERSDVSKAGQLPVNETVNTSVRTVNDSEVNEETVCVTNGNGDAEDNTENLENGHGSHSDELDNYVDLVLTDARDDSYSEINPSIVGILGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYAETVGRRGGRLAALSPAIHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEHAQLQREHKEKCSAHERLKREHLALEREVTCARDAVRARDAAAAAAGFAFVEAADCADMPQGFGSVPPLALVSHHSEQLLNDAGEGTLDVRLQKLVSSKQALESEVRKLKLSLNEERAARQNGVASLHEREHDSELESLRKSVAEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01153995;
- 90% Identity
- -
- 80% Identity
- -