Basic Information

Insect: Parnassius mnemosyne
Gene Symbol: clz9
Assembly: GCA_963668995.1
Location: CAVLGL010000046.1:19718907-19721530[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.6e-07 5.4e-05 24.8 0.0 3 36 27 61 25 68 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.6e-07	5.4e-05	24.8	0.0	3	36	27	61	25	68	0.91

Sequence Information

Coding Sequence: ATGCCACgaatatatattagaaaattcAGGAATACTAGGAATGGAAAGTCCTTCCTACCTTACACTAATTACAGCTCTGAAAATTTACAGAAAGCAATTCGAGACGTAAAAAGTAAGACTTTAACACTAGGAGAAGCATCATCTAAATATCAAATACCTAAAACAACGTTATCGAGAAAATGTAGAAACCTTAATTGCTCACAAGAAAAAGCAGGACGTCCTACCCTTTTTTCACCTGAAGAAGAGAAAGCCTTCATTAAACACATTGTAAATTTGGCAGACTGGGGATTCCCATTCGATCTTATTGATCTTCGTATTTTCGCGCAAAGGTACTTAAATAAACTCGGAAAAACAATATACGGACTACCCGAAAATTTGCCTGGTTCAGAATGGGCTCGAAACTTTTTAAGGCGTCATAAAGATTTGCTTTCGAACCGTATGGCTTCCAATATATCTACCGATAGAGCAAAGGTATCAGCATCGACGATAGACTCATTTTTTGAGTATTTTGCACCAACAATCGATGGTGTAACACCTGACCGAATCATAAACTATGATGAGACTAATTTAACTGACGACCCAGgaaacaaaaaatacatttataaacgtggtgtaaaatacccagaaCGGGTAACAAATACATCGAAAACGGCTGTTTCCCTAATGTTTGCTGCTACAGCCGAAGGTCAGTTATTACCGGTTTACGTGGTGTACAAAACAGAACACCTATGGGATACCTGGTTAGAAGGAGGTCCTCCAGACGCAATATACAATCGCTCTAAAAGCGGATGGTTCGACTCGGTTTGTTTCGAGAATTGGTTTGAAAAAGTGATCGTTCCATACGCTAAAAAAAAGCCTGGACGTAAAATTGTCATAGGTGACAATCTCTCTTCACACTTTTCTGAAAACGTATTAAAAAAGTGTGAAAAGCTAAACATTTCATTTGTGTGCTTGCCCCCCAAATCAACACACCTTCTGCAGCCGTTAGACGTTGCTCTGTATGGACCTTTAAAACATTATTGGCGAACTATATTGACTGGGTGGAAAAAAGTAGAAGGACGCAAACATAAAACCCTAGTAAAAGATGTTTTTCCGAAACTGCTGGCCAAACTTATGAACAAACTTATGGAAACCAACACAGGGGGAAAAAACGTCACTGCAGGTTTTAACAAATGTGGGCTTTATCCAATCAACCCGGAACGACCGAAGTCACGACTGCCACACAGTCATTATTTACTACCCGAGGAAATTGAAACAGCTGCTACTTCAGTTGTCATAGAACATCTAAAAGAAATGCGGGGGCTCTCGGCTTCAGATGAGCCCAGAAGACGTAAAAAACGATGTAATGTTCCAGCAGGCCGAGGCATCACAGCACGAGACATTGAGCAAACGAAACctaaaaaaccaaataaaatgaCAGATAATGAGTTTGTAAATAGTGAAGTAAAAGTTTCTTCATCTGACTCGTCTGAAATAATAGATATTTCAACATTTAATATTCTAGAGCCAGGTCCGTCCAAGTCAATAATCCAAACAAAAAGTAAAGGTATTgtaaaaagtagcaaaattggaAAAGAAAATCAAGATAAGAACATGAAACGCAAAGAAAACGGGAAAAAGAAATGTTTTGAAGAAAATAACCATGATAATGCactgaaacaaaataataaagataaaaagaaaaaaagaaattgcAGAAAAATTTCAACATGCTCTACTACTTCAGAGTCACAAACCATAAGTATATATGAAGATTCTGATTGTATTGACGAAAACTTTGACATTGATAGAGATATGGATTTAAGAAATATGAATCGTTGTCCCTCGGGTCCAGTCACATTGACAGAAAATCAAGAGATAGTCCAATCTTCTGACAACATAGAATCAAAAACACACAAGGAGTTAAGCACACTCGAAACTATAGAACAAATAATCCAAACTTCTGACAACATAGAACCAGGAATTACAAAGAAGGAGTTTAGAACAACCGAAAATATAGAAAACTTTAAAATAACTACACCTTCTGACATAATAGAACCAGAcatgaaaacaaataaaacaagctCAATCAGCATTCCAGCAAATCAAGGGATTGCTCAATATTGTAACAACAGAGAGAAAGAGACAACAACGACCAATGAGACTCAAGAAAACCGAGACACGAGTGAATTTTATGATAAGAAAGAAGCAAAAGTTACTACGAAAGAGAAATTACCAACAGAAAGCACTGACAAGACTATATCGAACCAAGAGACAAAACTATCAGAAGAAGATATCAAGACCAATTTTAACAACAATGATTCAGAAAGTAGAAACACAGAACAAGAAAAAGAATATGAATTGAATGACCACGTAATTGTAAGATACATcaacaaaaagaaatggaaatatTATATAGGTATCATAGAAAACATAAACATGGAAAATGAAGAACCTTATACTattagattttataaaacaactaaaAAACCGTCGTTACGGTTCCTTTTGACACGAAAGCTTGACAGGGACATAGTTCCCTCTATATGTATTGTCAAGAAAGTCAATTTGATACAAAACCCAAATTAA
Protein Sequence: MPRIYIRKFRNTRNGKSFLPYTNYSSENLQKAIRDVKSKTLTLGEASSKYQIPKTTLSRKCRNLNCSQEKAGRPTLFSPEEEKAFIKHIVNLADWGFPFDLIDLRIFAQRYLNKLGKTIYGLPENLPGSEWARNFLRRHKDLLSNRMASNISTDRAKVSASTIDSFFEYFAPTIDGVTPDRIINYDETNLTDDPGNKKYIYKRGVKYPERVTNTSKTAVSLMFAATAEGQLLPVYVVYKTEHLWDTWLEGGPPDAIYNRSKSGWFDSVCFENWFEKVIVPYAKKKPGRKIVIGDNLSSHFSENVLKKCEKLNISFVCLPPKSTHLLQPLDVALYGPLKHYWRTILTGWKKVEGRKHKTLVKDVFPKLLAKLMNKLMETNTGGKNVTAGFNKCGLYPINPERPKSRLPHSHYLLPEEIETAATSVVIEHLKEMRGLSASDEPRRRKKRCNVPAGRGITARDIEQTKPKKPNKMTDNEFVNSEVKVSSSDSSEIIDISTFNILEPGPSKSIIQTKSKGIVKSSKIGKENQDKNMKRKENGKKKCFEENNHDNALKQNNKDKKKKRNCRKISTCSTTSESQTISIYEDSDCIDENFDIDRDMDLRNMNRCPSGPVTLTENQEIVQSSDNIESKTHKELSTLETIEQIIQTSDNIEPGITKKEFRTTENIENFKITTPSDIIEPDMKTNKTSSISIPANQGIAQYCNNREKETTTTNETQENRDTSEFYDKKEAKVTTKEKLPTESTDKTISNQETKLSEEDIKTNFNNNDSESRNTEQEKEYELNDHVIVRYINKKKWKYYIGIIENINMENEEPYTIRFYKTTKKPSLRFLLTRKLDRDIVPSICIVKKVNLIQNPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01158872;
90% Identity: iTF_01158861; iTF_01156350; iTF_01156363; iTF_01158863; iTF_01158864; iTF_01158865; iTF_01158866; iTF_01158867; iTF_01158868; iTF_01155096; iTF_01158872; iTF_01156352;
80% Identity: -