Pmne045612.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000093.1:31699466-31701445[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-08 1.6e-05 26.4 0.0 1 41 16 57 16 60 0.90
Sequence Information
- Coding Sequence
- ATGgtgagaaattataaaaaaaaaaaaacaagtagagGGGATTGGTCAGAAGAAAGTATGAAAGATGCTGTGAAAAATGTGGTTGAAGGAAAAATTGGCTACAAGCTTGCAGCAAAATCATTTTCTGTCCCACAAACAACTTTAGAAAGAAAAGTGAAGCTTGTGCGAGAAAGTTTAGATAAGAATGATCCAATGACTGTTAAATTTAAGGTACCGTTAGGCCCAAAAGAGAAAGTTTTTACTGATAATGAAGAGGAAGAGCTATGTAAATACTTAATAGATATGGAGAGTAGGCTTTATGGATTGACAATGAAAGACTTAAGAGGTTTAGTCTATAGACTAGCGGTAAAAAATAACAAACGTCATCCGTTTAACAATGAAAAAGAAGAAGCCGGGAAAGACTGGGCATTAGGATTTTTAAAAAGGCACCCAGAACTGTCTATTAGACAGCCTGAAAGTACCTCATCCGCACGTGCTGCTGGTTTCAATAAACAGGTGGTAGACCAGTTTTTCAATTTTTTGGGCAATGTTTACGATGAACATCATCTAACACCTGATCGTATATACAACTGCGATGAAACTGGTATTTCAGTTGTGCCCAAAACCAAATCAAAAATTATCGCAAGAAAGGGCAGAAAGCAAGTGGGAGCCATAACATCTGCTGAACGAGGTACGACCATTACAGTAGAAATCTGTTTTAGTGCTAGTGGTAATTTTATGCCACCCATGATGGTATATCCTAGAAAAAGAATGGATCCGCAACTTATGATTAATGCTGCCCCCGGAGCTTGGGGAGTTTGCAGTGATTCGGGCTGGATGACTTCAGAACTTTTCCTACATTGGTTTAAAAAGTTCGTCAAATTTAGCGGAGCAACACCTGAGCATTCTGTTTTGTTATTATTGGATGGACATAGTACTCATACGAAGAACATTGATCTCATAAATGAAGCACGCACTCACGGCGTTATCATTTTATGTTTCCCACCACATACAACTCACCGTCTTCAGGTTGCAGACGTTGCTTACATGAGACCGTTAAGTACCTACTACGATCATCAAATCATGGCGTGGCTTCGCAGCAACCCAGGGATGACTGTCACTGTCCGACAAGTAGCTGAAATTTTTGGAAAGGCGTTCATACAAGCGTCTACGATGTCAACAGCTGTCAATGGTTTTAAGAAATGTGGGATTTGGCCATATGATCCAACAGTATTCTCTGAGACCGACTTTGCTCCATCTTTGATGACAGATATTCAGCTTAATGTATCCGACGCACCTGCAAGCGATAATAGTTCGTTGATAATGGAATCGTCATCCACAGAACCAGCAACAAATAATCAGAATGCGCCAATTATATCTGAAGCCATTTCTGTTGCGGCAACTTTGACGGATGCAGCAGTGACGCCAGTAACAGTGGAAACAGAAACATTGTCGAGACTTGATACTGCCGCTAGTATTTCTGCGAGTACGTCACTATCAACTAATCTGGTTAATCTGGAAAGACCACGAACTCCGCAGCAATCAATATTTGGTGTCGTAAGTCCGCAGCAAATAATGCCCTTTCCAGCAACTACAAAAACATCTCGCTCAACTAGAAAACGAGGAAAAACCGCGTTGATCACATCTTCGCCGTATAAGAATGAGTTAGAAGAAACGATTAAGAAAAAGGAACAAGCGGAAGAGGATAAACAGAGAAAAAAAGGGTTGAGGGAacttaaaaaatctgaaaaagaCCCGGCAACTAAGAAGAAAAGAGTAACAAAGAAGAAACAAGGGGCTAAGAATAGATCATTAAACGAGAATAGTGACAGCGATATTGAAAATACACCTTGTTTGTATTGTAAAGGCCTATATTTGGACTCAAATGAAGGCTGGGCTGCTTGTTCAGCATGCGGCAAATGGGCTCACTGCAGCTGTGCAGGTGTGGACGACGAAGATGCAGATACCGTGTTCACTTGTGAACATTGTGAACAGTCCTAA
- Protein Sequence
- MVRNYKKKKTSRGDWSEESMKDAVKNVVEGKIGYKLAAKSFSVPQTTLERKVKLVRESLDKNDPMTVKFKVPLGPKEKVFTDNEEEELCKYLIDMESRLYGLTMKDLRGLVYRLAVKNNKRHPFNNEKEEAGKDWALGFLKRHPELSIRQPESTSSARAAGFNKQVVDQFFNFLGNVYDEHHLTPDRIYNCDETGISVVPKTKSKIIARKGRKQVGAITSAERGTTITVEICFSASGNFMPPMMVYPRKRMDPQLMINAAPGAWGVCSDSGWMTSELFLHWFKKFVKFSGATPEHSVLLLLDGHSTHTKNIDLINEARTHGVIILCFPPHTTHRLQVADVAYMRPLSTYYDHQIMAWLRSNPGMTVTVRQVAEIFGKAFIQASTMSTAVNGFKKCGIWPYDPTVFSETDFAPSLMTDIQLNVSDAPASDNSSLIMESSSTEPATNNQNAPIISEAISVAATLTDAAVTPVTVETETLSRLDTAASISASTSLSTNLVNLERPRTPQQSIFGVVSPQQIMPFPATTKTSRSTRKRGKTALITSSPYKNELEETIKKKEQAEEDKQRKKGLRELKKSEKDPATKKKRVTKKKQGAKNRSLNENSDSDIENTPCLYCKGLYLDSNEGWAACSACGKWAHCSCAGVDDEDADTVFTCEHCEQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157642;
- 90% Identity
- iTF_00043423; iTF_01436962; iTF_00928611; iTF_00928612; iTF_00928613; iTF_00752006; iTF_00928614; iTF_00043431; iTF_00752007; iTF_00906986; iTF_00680459; iTF_00906987; iTF_00680460; iTF_00680461; iTF_00039727; iTF_00172783; iTF_00039728; iTF_00039729; iTF_00172788; iTF_00172789; iTF_00172790; iTF_01532982; iTF_00680471; iTF_01532983; iTF_01094840; iTF_01093017; iTF_01158880; iTF_00682337; iTF_00682338; iTF_00682339; iTF_00682340; iTF_00682346; iTF_00682329; iTF_00682331; iTF_01158878;
- 80% Identity
- -