Basic Information

Insect: Pararge aegeria
Gene Symbol: -
Assembly: GCA_905163445.1
Location: NC:2437218-2446246[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.2 9.9e+03 -3.6 0.2 27 48 7 28 5 29 0.79

2 13 0.092 4.1e+02 0.8 0.0 21 48 59 87 54 90 0.83

3 13 5.7e-05 0.25 11.1 0.1 20 48 89 117 86 121 0.89

4 13 0.0021 9.4 6.0 0.0 23 52 122 151 120 153 0.91

5 13 1.5e-06 0.0064 16.2 0.4 26 48 154 176 151 181 0.92

6 13 0.018 80 3.1 0.3 28 50 185 207 180 210 0.75

7 13 0.0036 16 5.3 0.3 25 47 213 235 204 238 0.83

8 13 0.13 5.8e+02 0.3 0.2 25 43 337 355 309 358 0.90

9 13 0.006 26 4.6 0.1 25 49 412 436 395 441 0.78

10 13 4.9e-06 0.022 14.5 0.2 26 51 470 495 464 498 0.91

11 13 0.0066 29 4.5 0.2 25 48 498 521 494 526 0.87

12 13 0.45 2e+03 -1.4 0.1 26 48 529 551 523 554 0.86

13 13 0.38 1.7e+03 -1.2 0.2 27 46 623 642 617 645 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.2	9.9e+03	-3.6	0.2	27	48	7	28	5	29	0.79
2	13	0.092	4.1e+02	0.8	0.0	21	48	59	87	54	90	0.83
3	13	5.7e-05	0.25	11.1	0.1	20	48	89	117	86	121	0.89
4	13	0.0021	9.4	6.0	0.0	23	52	122	151	120	153	0.91
5	13	1.5e-06	0.0064	16.2	0.4	26	48	154	176	151	181	0.92
6	13	0.018	80	3.1	0.3	28	50	185	207	180	210	0.75
7	13	0.0036	16	5.3	0.3	25	47	213	235	204	238	0.83
8	13	0.13	5.8e+02	0.3	0.2	25	43	337	355	309	358	0.90
9	13	0.006	26	4.6	0.1	25	49	412	436	395	441	0.78
10	13	4.9e-06	0.022	14.5	0.2	26	51	470	495	464	498	0.91
11	13	0.0066	29	4.5	0.2	25	48	498	521	494	526	0.87
12	13	0.45	2e+03	-1.4	0.1	26	48	529	551	523	554	0.86
13	13	0.38	1.7e+03	-1.2	0.2	27	46	623	642	617	645	0.82

Sequence Information

Coding Sequence: ATGCCTGAACAATACGTTTGCGATTACTGTGATCGCTTATTTACAAGAAAGCACAACCTTCAAACGCATATAAAGAATTGGCACCTAGGCTTATCGTGCTACTGCGATATTTGTGACCGAAACTTAGGGAGCCCTGCTGGCTTAATTTTACACCTTAGCCATGGTCACAATAGCTCTGGTCAGCCGTTCCCCGAATGCGACTTATGTGGGCGTGTTTTCTCtcgaaaacaaaatataacctCGCACATGAATACGGTGCATTTGCAAACAAACTCGGCCATTTCTTGCAAAATATGCAATAAAACTCTCACCACGGGTAGGAATATGAAGCGACATATAGCACTTATGCATAACCCTGATATACAATATCTAACTTGCGATGTGTGCAAAAAGGTTTTCAAAAGAAAAGACACCTTAATAGCTCATATACAGTCCAACCATCTGGCGAAAGGTTCAATAAAATGTGATCTATGCGTCAGAGTTTACAGGAGTAATAAGAATTTGAGAAGGCACATGGAGATGAGTCATGGTCAGAGGGGGGAGTATAAATGCGAATTTTGCCCGAAAGCCTACACTTCAAATCAAAGTCTGAGACGGCACTTGAGAACCCAGCATTTAAGTGAGGGTAATGAACAGCTCAGTTGcggttattgttataaaattatacacgGAAGAGAAAATTTCGTGAGACATATCACTTCTTATCACAACCAGCTTGTACCGGAAACGTTCGAGTCGAGCATATACGATTTCTCCTGCGAATTATGCGACATGAATTACAAAAAGGAATATTTACTGAGACAGCATGTGAAAACGGCGCATACTTTTCAAGAGTTTTACGCGTATTGCAAGGAATCTTTAATAAAATCGGTGGAGAAACTTGAAAAGAATAAAAGGATGAGAGAGCGTGGCCATCTTTTTCGATGcgaattttgtattaaaacgcTCGCGAATGTTTACGAGCTGAAAGATCATATGCGAGCAGCGCACTACAAAGAATACTGTTTATCGACATGCAACGTTTGTTTCCAAAAGTTCTTTAGCAAAGAAACTATAAGGAGACATAGAAAAACTTGTATTCCACCCACGAATGTGAACAGTTGCGCATATTGCGACAAATTATTCACTGATATATCTAGTCTAGATTTCCATTTAAGAATCTTTCACCCTCAAGCGCAACTAGTGGATTCTAAAATTAAATCCCACTCAGAAGACTCGTCAAAAAGATCGTCATATAAATGTGTTCATTGCGGAAGGATATACCATAATACAAGGTCCCTCAAGCATCATATGAAGTTGAAACACACTGTTGATGACCCCGTGAAATGCCAATCATGCGACAAAATTTGCAACAACAAATACTCTTTGGCGTACCATAAAATGGTGCATAAAAACACGTCCTGGTCGAAATGCGACTACTGCGAGAAGGTGTTCAAATCCAAACGCAATATACGAAGACACATCGAATACACGCATTTGGgaaaacaaaggtacaagtGTATTGAGTGCGAAACGCTTTTTAAGGAGAAACGGAGTTTGAGAAAACACGTGCGGATTAAGCATCCGAATTCCGCAGCGTTTCCGCAATGCCATATCTGTGAAAAACGTTTCGAGTCCGCGAAATCTTGCAAAACACATTTGAAACTGATCCACTCGTTCAACATGAACACGCATCCTTGCGACCTTTGCTCGGTGTCTTTCGACTCTCTCGAAGCTTTGAACATACATTTATCAACGAAACATTTGGCTGCAGACGAGATTTACAAATGCGAGGAGTGCAACTTTGTCTTCAAAGGCCAGGAACAATACGGGAATCATTGTGAAACGTATCATTCGCATCCGCCAGAAGCGAAATGCTTACCGCGCTGCATTATATGTATGAAGGACTTCAGTTCTCGTAAAACTCTGAAGCGTCACATAAAGAAGTTCCACAGTGATTTTAACGTGGACGAATTAGCCACATATGGGTCAAGACGTCTCGCGTTTAACGTCGATTGTGGTGAATGCATCAGGAGTTTCAACGACGATAACTATTTCGGTGTATATCTTAAAGTTAAACATTTACGCGAGTCGATAATATTCAAATGTGAAACGTGCAGAAGTTCGTACAATACTTTGGAATACGCGATACAAAGGTATAAGCAAAGTATTGATGTTAAGCAGAATAAATTGTATTTGAGTGAGTTATGCACAACACAGATGAGCGATGATTCTAGAGATTCCGTCGAGGCAATGGAATCAGACAGCCCCACAgattacattaaaaaagaacCTCACGAAGATATTGAGGTGTATGATGAATTTACTCCTAGTCTCAACATTAAAACGGAACCTGCTTCTCCGTGA
Protein Sequence: MPEQYVCDYCDRLFTRKHNLQTHIKNWHLGLSCYCDICDRNLGSPAGLILHLSHGHNSSGQPFPECDLCGRVFSRKQNITSHMNTVHLQTNSAISCKICNKTLTTGRNMKRHIALMHNPDIQYLTCDVCKKVFKRKDTLIAHIQSNHLAKGSIKCDLCVRVYRSNKNLRRHMEMSHGQRGEYKCEFCPKAYTSNQSLRRHLRTQHLSEGNEQLSCGYCYKIIHGRENFVRHITSYHNQLVPETFESSIYDFSCELCDMNYKKEYLLRQHVKTAHTFQEFYAYCKESLIKSVEKLEKNKRMRERGHLFRCEFCIKTLANVYELKDHMRAAHYKEYCLSTCNVCFQKFFSKETIRRHRKTCIPPTNVNSCAYCDKLFTDISSLDFHLRIFHPQAQLVDSKIKSHSEDSSKRSSYKCVHCGRIYHNTRSLKHHMKLKHTVDDPVKCQSCDKICNNKYSLAYHKMVHKNTSWSKCDYCEKVFKSKRNIRRHIEYTHLGKQRYKCIECETLFKEKRSLRKHVRIKHPNSAAFPQCHICEKRFESAKSCKTHLKLIHSFNMNTHPCDLCSVSFDSLEALNIHLSTKHLAADEIYKCEECNFVFKGQEQYGNHCETYHSHPPEAKCLPRCIICMKDFSSRKTLKRHIKKFHSDFNVDELATYGSRRLAFNVDCGECIRSFNDDNYFGVYLKVKHLRESIIFKCETCRSSYNTLEYAIQRYKQSIDVKQNKLYLSELCTTQMSDDSRDSVEAMESDSPTDYIKKEPHEDIEVYDEFTPSLNIKTEPASP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01151401;
90% Identity: iTF_01151401;
80% Identity: iTF_01151401;