Paeg002342.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:2437218-2446246[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.1e-06 8.4e-05 22.4 2.8 1 23 5 28 5 28 0.97 2 20 0.096 3.9 7.7 0.4 2 23 34 56 33 56 0.92 3 20 2.9e-06 0.00012 21.9 0.5 2 23 65 87 65 87 0.97 4 20 0.00099 0.041 14.0 0.5 2 23 95 117 94 117 0.93 5 20 1.2e-06 5.1e-05 23.1 0.5 2 23 125 147 124 147 0.96 6 20 2.1e-05 0.00085 19.2 0.7 2 23 154 176 153 176 0.96 7 20 8.1e-07 3.3e-05 23.7 1.9 1 23 182 205 182 205 0.98 8 20 0.54 22 5.4 0.9 2 23 214 236 213 236 0.94 9 20 0.00042 0.017 15.1 0.8 1 23 251 274 251 274 0.98 10 20 0.012 0.48 10.6 0.2 1 23 307 330 307 330 0.96 11 20 0.056 2.3 8.4 2.1 2 22 338 358 337 358 0.95 12 20 0.047 1.9 8.7 0.4 3 23 368 389 367 389 0.94 13 20 0.0047 0.19 11.8 7.9 1 23 412 435 412 435 0.97 14 20 0.0051 0.21 11.7 2.2 2 23 442 463 441 463 0.97 15 20 2.1e-05 0.00086 19.2 1.6 2 23 470 492 469 492 0.94 16 20 0.011 0.47 10.6 1.5 1 23 498 521 498 521 0.96 17 20 0.075 3.1 8.0 4.9 2 23 529 551 529 551 0.95 18 20 0.002 0.083 13.0 0.3 1 23 558 581 558 581 0.96 19 20 0.065 2.7 8.2 3.0 1 21 588 608 588 611 0.87 20 20 0.025 1 9.5 3.3 3 23 623 644 618 644 0.88
Sequence Information
- Coding Sequence
- ATGCCTGAACAATACGTTTGCGATTACTGTGATCGCTTATTTACAAGAAAGCACAACCTTCAAACGCATATAAAGAATTGGCACCTAGGCTTATCGTGCTACTGCGATATTTGTGACCGAAACTTAGGGAGCCCTGCTGGCTTAATTTTACACCTTAGCCATGGTCACAATAGCTCTGGTCAGCCGTTCCCCGAATGCGACTTATGTGGGCGTGTTTTCTCtcgaaaacaaaatataacctCGCACATGAATACGGTGCATTTGCAAACAAACTCGGCCATTTCTTGCAAAATATGCAATAAAACTCTCACCACGGGTAGGAATATGAAGCGACATATAGCACTTATGCATAACCCTGATATACAATATCTAACTTGCGATGTGTGCAAAAAGGTTTTCAAAAGAAAAGACACCTTAATAGCTCATATACAGTCCAACCATCTGGCGAAAGGTTCAATAAAATGTGATCTATGCGTCAGAGTTTACAGGAGTAATAAGAATTTGAGAAGGCACATGGAGATGAGTCATGGTCAGAGGGGGGAGTATAAATGCGAATTTTGCCCGAAAGCCTACACTTCAAATCAAAGTCTGAGACGGCACTTGAGAACCCAGCATTTAAGTGAGGGTAATGAACAGCTCAGTTGcggttattgttataaaattatacacgGAAGAGAAAATTTCGTGAGACATATCACTTCTTATCACAACCAGCTTGTACCGGAAACGTTCGAGTCGAGCATATACGATTTCTCCTGCGAATTATGCGACATGAATTACAAAAAGGAATATTTACTGAGACAGCATGTGAAAACGGCGCATACTTTTCAAGAGTTTTACGCGTATTGCAAGGAATCTTTAATAAAATCGGTGGAGAAACTTGAAAAGAATAAAAGGATGAGAGAGCGTGGCCATCTTTTTCGATGcgaattttgtattaaaacgcTCGCGAATGTTTACGAGCTGAAAGATCATATGCGAGCAGCGCACTACAAAGAATACTGTTTATCGACATGCAACGTTTGTTTCCAAAAGTTCTTTAGCAAAGAAACTATAAGGAGACATAGAAAAACTTGTATTCCACCCACGAATGTGAACAGTTGCGCATATTGCGACAAATTATTCACTGATATATCTAGTCTAGATTTCCATTTAAGAATCTTTCACCCTCAAGCGCAACTAGTGGATTCTAAAATTAAATCCCACTCAGAAGACTCGTCAAAAAGATCGTCATATAAATGTGTTCATTGCGGAAGGATATACCATAATACAAGGTCCCTCAAGCATCATATGAAGTTGAAACACACTGTTGATGACCCCGTGAAATGCCAATCATGCGACAAAATTTGCAACAACAAATACTCTTTGGCGTACCATAAAATGGTGCATAAAAACACGTCCTGGTCGAAATGCGACTACTGCGAGAAGGTGTTCAAATCCAAACGCAATATACGAAGACACATCGAATACACGCATTTGGgaaaacaaaggtacaagtGTATTGAGTGCGAAACGCTTTTTAAGGAGAAACGGAGTTTGAGAAAACACGTGCGGATTAAGCATCCGAATTCCGCAGCGTTTCCGCAATGCCATATCTGTGAAAAACGTTTCGAGTCCGCGAAATCTTGCAAAACACATTTGAAACTGATCCACTCGTTCAACATGAACACGCATCCTTGCGACCTTTGCTCGGTGTCTTTCGACTCTCTCGAAGCTTTGAACATACATTTATCAACGAAACATTTGGCTGCAGACGAGATTTACAAATGCGAGGAGTGCAACTTTGTCTTCAAAGGCCAGGAACAATACGGGAATCATTGTGAAACGTATCATTCGCATCCGCCAGAAGCGAAATGCTTACCGCGCTGCATTATATGTATGAAGGACTTCAGTTCTCGTAAAACTCTGAAGCGTCACATAAAGAAGTTCCACAGTGATTTTAACGTGGACGAATTAGCCACATATGGGTCAAGACGTCTCGCGTTTAACGTCGATTGTGGTGAATGCATCAGGAGTTTCAACGACGATAACTATTTCGGTGTATATCTTAAAGTTAAACATTTACGCGAGTCGATAATATTCAAATGTGAAACGTGCAGAAGTTCGTACAATACTTTGGAATACGCGATACAAAGGTATAAGCAAAGTATTGATGTTAAGCAGAATAAATTGTATTTGAGTGAGTTATGCACAACACAGATGAGCGATGATTCTAGAGATTCCGTCGAGGCAATGGAATCAGACAGCCCCACAgattacattaaaaaagaacCTCACGAAGATATTGAGGTGTATGATGAATTTACTCCTAGTCTCAACATTAAAACGGAACCTGCTTCTCCGTGA
- Protein Sequence
- MPEQYVCDYCDRLFTRKHNLQTHIKNWHLGLSCYCDICDRNLGSPAGLILHLSHGHNSSGQPFPECDLCGRVFSRKQNITSHMNTVHLQTNSAISCKICNKTLTTGRNMKRHIALMHNPDIQYLTCDVCKKVFKRKDTLIAHIQSNHLAKGSIKCDLCVRVYRSNKNLRRHMEMSHGQRGEYKCEFCPKAYTSNQSLRRHLRTQHLSEGNEQLSCGYCYKIIHGRENFVRHITSYHNQLVPETFESSIYDFSCELCDMNYKKEYLLRQHVKTAHTFQEFYAYCKESLIKSVEKLEKNKRMRERGHLFRCEFCIKTLANVYELKDHMRAAHYKEYCLSTCNVCFQKFFSKETIRRHRKTCIPPTNVNSCAYCDKLFTDISSLDFHLRIFHPQAQLVDSKIKSHSEDSSKRSSYKCVHCGRIYHNTRSLKHHMKLKHTVDDPVKCQSCDKICNNKYSLAYHKMVHKNTSWSKCDYCEKVFKSKRNIRRHIEYTHLGKQRYKCIECETLFKEKRSLRKHVRIKHPNSAAFPQCHICEKRFESAKSCKTHLKLIHSFNMNTHPCDLCSVSFDSLEALNIHLSTKHLAADEIYKCEECNFVFKGQEQYGNHCETYHSHPPEAKCLPRCIICMKDFSSRKTLKRHIKKFHSDFNVDELATYGSRRLAFNVDCGECIRSFNDDNYFGVYLKVKHLRESIIFKCETCRSSYNTLEYAIQRYKQSIDVKQNKLYLSELCTTQMSDDSRDSVEAMESDSPTDYIKKEPHEDIEVYDEFTPSLNIKTEPASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01151725; iTF_01151378;
- 90% Identity
- iTF_01151725; iTF_01151378;
- 80% Identity
- iTF_01151725; iTF_01151378;