Basic Information

Insect: Pararge aegeria
Gene Symbol: -
Assembly: GCA_905163445.1
Location: NC:1714557-1717322[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.018 80 3.1 0.0 21 46 165 190 161 197 0.75

2 27 0.12 5.2e+02 0.5 0.1 20 43 192 215 181 220 0.75

3 27 5.7e-05 0.25 11.1 0.0 20 46 220 246 210 253 0.80

4 27 0.07 3.1e+02 1.2 0.1 21 44 249 272 245 277 0.77

5 27 5.8e-05 0.25 11.1 0.0 21 46 277 302 267 308 0.82

6 27 0.041 1.8e+02 1.9 0.1 21 46 305 330 301 337 0.85

7 27 0.14 6e+02 0.3 0.2 21 43 333 355 325 360 0.77

8 27 0.011 50 3.7 0.2 20 44 360 384 350 388 0.76

9 27 7.1e-05 0.32 10.8 0.0 21 47 389 415 384 421 0.84

10 27 0.044 1.9e+02 1.8 0.0 21 45 417 441 413 448 0.85

11 27 0.036 1.6e+02 2.1 0.0 21 45 445 469 433 477 0.72

12 27 0.057 2.5e+02 1.5 0.1 20 44 472 496 462 500 0.73

13 27 5.4e-05 0.24 11.1 0.0 20 46 500 526 489 533 0.80

14 27 0.068 3e+02 1.2 0.1 21 44 529 552 524 556 0.76

15 27 5.5e-05 0.24 11.1 0.0 21 47 557 583 548 589 0.82

16 27 0.044 2e+02 1.8 0.1 21 46 585 610 582 617 0.85

17 27 0.08 3.5e+02 1.0 0.1 21 44 613 636 605 640 0.76

18 27 0.011 50 3.7 0.2 20 44 640 664 630 668 0.76

19 27 7.8e-05 0.34 10.6 0.0 21 46 669 694 664 700 0.84

20 27 0.042 1.8e+02 1.9 0.0 21 46 697 722 694 730 0.85

21 27 0.032 1.4e+02 2.2 0.0 21 45 725 749 711 758 0.72

22 27 0.054 2.4e+02 1.5 0.1 20 44 752 776 741 780 0.73

23 27 5.3e-05 0.23 11.2 0.0 20 46 780 806 768 813 0.80

24 27 0.037 1.6e+02 2.1 0.0 21 46 809 834 805 842 0.84

25 27 0.036 1.6e+02 2.1 0.1 20 45 836 861 821 868 0.72

26 27 0.06 2.6e+02 1.4 0.1 20 44 864 888 855 892 0.73

27 27 0.00055 2.4 7.9 0.1 20 45 892 917 882 921 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.018	80	3.1	0.0	21	46	165	190	161	197	0.75
2	27	0.12	5.2e+02	0.5	0.1	20	43	192	215	181	220	0.75
3	27	5.7e-05	0.25	11.1	0.0	20	46	220	246	210	253	0.80
4	27	0.07	3.1e+02	1.2	0.1	21	44	249	272	245	277	0.77
5	27	5.8e-05	0.25	11.1	0.0	21	46	277	302	267	308	0.82
6	27	0.041	1.8e+02	1.9	0.1	21	46	305	330	301	337	0.85
7	27	0.14	6e+02	0.3	0.2	21	43	333	355	325	360	0.77
8	27	0.011	50	3.7	0.2	20	44	360	384	350	388	0.76
9	27	7.1e-05	0.32	10.8	0.0	21	47	389	415	384	421	0.84
10	27	0.044	1.9e+02	1.8	0.0	21	45	417	441	413	448	0.85
11	27	0.036	1.6e+02	2.1	0.0	21	45	445	469	433	477	0.72
12	27	0.057	2.5e+02	1.5	0.1	20	44	472	496	462	500	0.73
13	27	5.4e-05	0.24	11.1	0.0	20	46	500	526	489	533	0.80
14	27	0.068	3e+02	1.2	0.1	21	44	529	552	524	556	0.76
15	27	5.5e-05	0.24	11.1	0.0	21	47	557	583	548	589	0.82
16	27	0.044	2e+02	1.8	0.1	21	46	585	610	582	617	0.85
17	27	0.08	3.5e+02	1.0	0.1	21	44	613	636	605	640	0.76
18	27	0.011	50	3.7	0.2	20	44	640	664	630	668	0.76
19	27	7.8e-05	0.34	10.6	0.0	21	46	669	694	664	700	0.84
20	27	0.042	1.8e+02	1.9	0.0	21	46	697	722	694	730	0.85
21	27	0.032	1.4e+02	2.2	0.0	21	45	725	749	711	758	0.72
22	27	0.054	2.4e+02	1.5	0.1	20	44	752	776	741	780	0.73
23	27	5.3e-05	0.23	11.2	0.0	20	46	780	806	768	813	0.80
24	27	0.037	1.6e+02	2.1	0.0	21	46	809	834	805	842	0.84
25	27	0.036	1.6e+02	2.1	0.1	20	45	836	861	821	868	0.72
26	27	0.06	2.6e+02	1.4	0.1	20	44	864	888	855	892	0.73
27	27	0.00055	2.4	7.9	0.1	20	45	892	917	882	921	0.81

Sequence Information

Coding Sequence: ATGAACCAAGCCAAACGAGTTGAATGTGACACCGATAAGGAAACCCAACGAAAACATGATGTGAAAAATGAAACAGAGAACGTAACCGACAAGCGTAAGTATGTACCGCCGATGAAAAAAACATATGAAATTCAAAACGAATTAAGCACCCAAATTGATGAAAAGATcgaagattttaataattcgacGTGCATAACAGAACCGGCGACAAAAAGAGCTAAGTACACAGAACCCATTGTGAATaaaatcgaaaataaaaaaacacatacagCCCATAAAAAAGTTATGGAAACTCTACTCAATTCTAAccccaaaaatattaatataatattactacaaAATGATATTCGTCAGTATAGTTATaccccaaaaaaaaatttagataatAACTTGATTTTACACACACACGACAAAAACGAATTAAAGTGTAACCGTTGTGGACATACGACCAATAAGAAATCTCACTTGATATCTCATTTGAAAACTCACACTGGTGAGAAACCGTTTTCATGTAATATTTGTGATTACAAATGTATAACAAGCAGTGGCTTAAAGAAACACGTGAAAACACACACTGGTGAGAAACCGTTCTCTTGTAAAGTGTGTGATTACAAATGTATCACAAGAAGTGGCTTAAAGAAACACGTGAGAACACATACTGGTGAGAAACCGTTTACGTGTAACGTGTGTGATTACAAATTTATACAAAGCGGCGACTTGAAGAGACACATGAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTACAAGCAGTGCCTTAAAGAAACACGTGAGAACACACACTGGGGAGAAACCTTTTACGTGTAACGTGTGTGATTACAAATTTATACAAAGCGGCGACTTGAAGAGACACATGAAAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTAGAGATACCTGTAAATTGAAGACACACATAAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTACAAGAAGTGGCTTAAAGAAACACGTGAGAACACACACCGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTGCAAGCAGTGCCTTAAGGAAACACGTGAGAACACACACTGGTGAGAAACCGTTTACGTGTAACGTGTGTGATTACAAATTTATACAAAGCGGCGACTTGAAGAGACACATGAAAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTAGAGATACCGGTAAATTGAAGACACACATGAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTACAAGCAGTGGCTTAAAGAAACACGTGAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTACAAGCAGTGGCTTAAAGAAACACGTGAGAACACACACTGGTGAGAAACCGTTTACGTGTAACGTGTGTGATTACAAATTTATACAAAGCGGCGACTTGAAGAGACACATGAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTACAAGCAGTGCCTTAAAGAAACACGTGAGAACACACACTGGGGAGAAACCTTTTACGTGTAACGTGTGTGATTACAAATTTATACAAAGCGGCGACTTGAAGAGACACATGAAAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTAGAGATACCTGTAAATTGAAGACACACATAAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTACAAGCAGTGGCTTAAAGAAACACGTGAGAACACACACCGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTGCAAGCAGTGCCTTAAGGAAACACGTGAGAACACACACTGGTGAGAAACCGTTTACGTGTAACGTGTGTGATTACAAATTTATACAAAGCGGCGACTTGAAGAGACACATGAAAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTAGAGATACCGGTAAATTGAAGACACACATGAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTACAAGCAGTGGCTTAAAGAAACACGTGAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTACAAGCAGTGGCTTAAAGAAACACGTGAGAACACACACTGGTGAGAAACCGTTTACGTGTAACGTGTGTGATTACAAATTTATACAAAGCGGCGACTTGAAGAGACACATGAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTAGAGATACCGGTAAATTGAAGACACACATGAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTACAAGCAGTGGCTTAAAGAAACACGTGAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTGTGTGATTACAAATGTATTACAAGCAGTGGCTTAAAGAAACACGTGAGAACACACACTGGTGAGAAACCGTTCTCTTGTAATGTTTGTGATTACAAATGTATACAAAGCGGCGACTTGAAGAGACACATGAGAACACACCTATTTTAG
Protein Sequence: MNQAKRVECDTDKETQRKHDVKNETENVTDKRKYVPPMKKTYEIQNELSTQIDEKIEDFNNSTCITEPATKRAKYTEPIVNKIENKKTHTAHKKVMETLLNSNPKNINIILLQNDIRQYSYTPKKNLDNNLILHTHDKNELKCNRCGHTTNKKSHLISHLKTHTGEKPFSCNICDYKCITSSGLKKHVKTHTGEKPFSCKVCDYKCITRSGLKKHVRTHTGEKPFTCNVCDYKFIQSGDLKRHMRTHTGEKPFSCNVCDYKCITSSALKKHVRTHTGEKPFTCNVCDYKFIQSGDLKRHMKTHTGEKPFSCNVCDYKCRDTCKLKTHIRTHTGEKPFSCNVCDYKCITRSGLKKHVRTHTGEKPFSCNVCDYKCIASSALRKHVRTHTGEKPFTCNVCDYKFIQSGDLKRHMKTHTGEKPFSCNVCDYKCRDTGKLKTHMRTHTGEKPFSCNVCDYKCITSSGLKKHVRTHTGEKPFSCNVCDYKCITSSGLKKHVRTHTGEKPFTCNVCDYKFIQSGDLKRHMRTHTGEKPFSCNVCDYKCITSSALKKHVRTHTGEKPFTCNVCDYKFIQSGDLKRHMKTHTGEKPFSCNVCDYKCRDTCKLKTHIRTHTGEKPFSCNVCDYKCITSSGLKKHVRTHTGEKPFSCNVCDYKCIASSALRKHVRTHTGEKPFTCNVCDYKFIQSGDLKRHMKTHTGEKPFSCNVCDYKCRDTGKLKTHMRTHTGEKPFSCNVCDYKCITSSGLKKHVRTHTGEKPFSCNVCDYKCITSSGLKKHVRTHTGEKPFTCNVCDYKFIQSGDLKRHMRTHTGEKPFSCNVCDYKCRDTGKLKTHMRTHTGEKPFSCNVCDYKCITSSGLKKHVRTHTGEKPFSCNVCDYKCITSSGLKKHVRTHTGEKPFSCNVCDYKCIQSGDLKRHMRTHLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01151385;
90% Identity: iTF_01151385;
80% Identity: iTF_01151385;