Pmar020607.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01056403.1:453-4464[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.13 9.4e+02 0.3 0.0 23 45 25 47 20 50 0.84 2 11 0.025 1.7e+02 2.6 0.0 26 45 57 76 52 83 0.90 3 11 0.55 3.9e+03 -1.7 0.0 26 45 91 110 77 113 0.77 4 11 0.93 6.5e+03 -2.4 0.0 26 48 120 142 115 143 0.80 5 11 0.0019 14 6.2 0.2 26 44 165 183 153 197 0.83 6 11 0.017 1.2e+02 3.1 0.0 26 45 207 226 192 233 0.86 7 11 0.0036 25 5.3 0.2 26 48 236 258 227 261 0.90 8 11 0.0012 8.4 6.8 0.2 26 46 302 322 293 327 0.86 9 11 0.93 6.5e+03 -2.4 0.0 27 46 332 351 330 352 0.78 10 11 0.00037 2.6 8.5 0.0 12 45 365 400 362 405 0.83 11 11 0.0017 12 6.4 0.4 22 48 406 432 400 434 0.86
Sequence Information
- Coding Sequence
- ATGTTTTCCCGTCGCAATCAAACGAATTGTGATTACAGCCAACGCCAACTTGACTTTGCCAAATCGTCAAATAACTCGTTCCCTTGCCCCAACTGTACCAGCAGTTTCAAACACAAAAGTAGCTTGAAAACTCATTTACAGGCCGATTGtggcaagaaaaaattattcgtttgcGACATATGTTTCAAAGAATTTAGTTATAAGTCGAATTTACGAACTCATATGGGATTTGTACGTAACCAAACCGAAAATGCAGGGCAAGATATCCTTCAATGTCCCCGATGTAACTCTACGTTCAAATACAAAAGTAGTTTGGTGACTCATTTACGAGTTGACTGCGGCAAGAAGAAATCCTTCGTGTGCGCAGTCTGCACCAAAGAATTCAGCTATAAACAGAGCTTGAAGACGCATATGGGTCTCGTGCACAAAATACTAATACCGCAGTTTCGTTGGATGACCAAATCGGACGTGCCGAAATCGCAAAATCTATTCCCGTGTCCTAATTGCAGCAGCGTTTTCAAGTATAAACGTAACTTGTATACGCATGCGAAAACCGAATGcggACACTTGAGAAGGCAAAGCTCGCCGGCTGGTTTACCAAAATCCCCGAATAAGTTTCCGTGTCCCGATTGTGGTAGTGTATTCAAGTATAAAGGAAACTTGACGACTCATTTAAAAACCGAATGTGGCAAGAAAAGATCGTTCGTGTGCGAAGTgtgtttcaaaactttcacgTACAAACATAATCTAGAAAGGCATATCATTCTTTTGCATAAAATATCTATGTTCGTTTCGTTCCAGTTGTACTTCTCGGATCATCTGTTTCGGACAAATATCAACGACGGGACATCGGTATGGGTAACGAAAAACGTCGAAGAATTTCCTCCTCGAAGCCGAGGATTTTCCTGCCCCAAGTGTAGAAGTGTATTCACCATGAGGCAAAACTTGATGCATCATTTGAAATTGGAATGTAGTAAAGTGAAGAAGTTCAAGTGCGAAGTATGCGCTAAAGAATTCGGTTAcaaaggaaatttaaaaactcatATGGaGATACCAGACCAGCTTGAAAATGTAATAGAGTCCCAATTCGGAAAAGCTAAGTGGAGAAAAGCCAGTCCGGCAGAATTACCGCGATTATTATCGTGTCCCGATTGCGGTGCTGTGTTCAAGTACAAGTGCAACTTGACGACTCATTTGAAAGCTAAATGCGGCCAAAGGAAACCGTTCAAATGCGATGTTTGTTTTAAATCATTCGGTCGTAAACATACTTTACGAAGGCATATCCGATGTGTGCATAAAATagtacagaaaaaataa
- Protein Sequence
- MFSRRNQTNCDYSQRQLDFAKSSNNSFPCPNCTSSFKHKSSLKTHLQADCGKKKLFVCDICFKEFSYKSNLRTHMGFVRNQTENAGQDILQCPRCNSTFKYKSSLVTHLRVDCGKKKSFVCAVCTKEFSYKQSLKTHMGLVHKILIPQFRWMTKSDVPKSQNLFPCPNCSSVFKYKRNLYTHAKTECGHLRRQSSPAGLPKSPNKFPCPDCGSVFKYKGNLTTHLKTECGKKRSFVCEVCFKTFTYKHNLERHIILLHKISMFVSFQLYFSDHLFRTNINDGTSVWVTKNVEEFPPRSRGFSCPKCRSVFTMRQNLMHHLKLECSKVKKFKCEVCAKEFGYKGNLKTHMEIPDQLENVIESQFGKAKWRKASPAELPRLLSCPDCGAVFKYKCNLTTHLKAKCGQRKPFKCDVCFKSFGRKHTLRRHIRCVHKIVQKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150644;
- 90% Identity
- iTF_01150644;
- 80% Identity
- iTF_01150644;