Pmar020607.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01056403.1:453-4464[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.9e-05 0.0031 18.1 1.1 1 21 27 47 27 48 0.95 2 11 2.9e-06 0.00023 21.7 0.5 1 20 56 75 56 76 0.97 3 11 9.9e-05 0.0078 16.8 0.4 2 22 91 111 90 111 0.94 4 11 3.3e-05 0.0026 18.3 0.5 1 23 119 142 119 142 0.93 5 11 0.0021 0.17 12.7 2.2 1 22 164 185 164 189 0.93 6 11 2e-06 0.00016 22.1 0.1 1 22 206 227 206 227 0.96 7 11 1.4e-06 0.00011 22.6 1.9 1 23 235 258 235 258 0.95 8 11 0.001 0.082 13.6 1.3 1 21 301 321 301 322 0.95 9 11 5.8e-05 0.0046 17.6 0.1 1 21 330 350 330 351 0.95 10 11 1.7e-05 0.0014 19.2 0.5 2 21 381 400 380 401 0.94 11 11 7e-05 0.0056 17.3 5.8 1 21 409 429 409 432 0.96
Sequence Information
- Coding Sequence
- ATGTTTTCCCGTCGCAATCAAACGAATTGTGATTACAGCCAACGCCAACTTGACTTTGCCAAATCGTCAAATAACTCGTTCCCTTGCCCCAACTGTACCAGCAGTTTCAAACACAAAAGTAGCTTGAAAACTCATTTACAGGCCGATTGtggcaagaaaaaattattcgtttgcGACATATGTTTCAAAGAATTTAGTTATAAGTCGAATTTACGAACTCATATGGGATTTGTACGTAACCAAACCGAAAATGCAGGGCAAGATATCCTTCAATGTCCCCGATGTAACTCTACGTTCAAATACAAAAGTAGTTTGGTGACTCATTTACGAGTTGACTGCGGCAAGAAGAAATCCTTCGTGTGCGCAGTCTGCACCAAAGAATTCAGCTATAAACAGAGCTTGAAGACGCATATGGGTCTCGTGCACAAAATACTAATACCGCAGTTTCGTTGGATGACCAAATCGGACGTGCCGAAATCGCAAAATCTATTCCCGTGTCCTAATTGCAGCAGCGTTTTCAAGTATAAACGTAACTTGTATACGCATGCGAAAACCGAATGcggACACTTGAGAAGGCAAAGCTCGCCGGCTGGTTTACCAAAATCCCCGAATAAGTTTCCGTGTCCCGATTGTGGTAGTGTATTCAAGTATAAAGGAAACTTGACGACTCATTTAAAAACCGAATGTGGCAAGAAAAGATCGTTCGTGTGCGAAGTgtgtttcaaaactttcacgTACAAACATAATCTAGAAAGGCATATCATTCTTTTGCATAAAATATCTATGTTCGTTTCGTTCCAGTTGTACTTCTCGGATCATCTGTTTCGGACAAATATCAACGACGGGACATCGGTATGGGTAACGAAAAACGTCGAAGAATTTCCTCCTCGAAGCCGAGGATTTTCCTGCCCCAAGTGTAGAAGTGTATTCACCATGAGGCAAAACTTGATGCATCATTTGAAATTGGAATGTAGTAAAGTGAAGAAGTTCAAGTGCGAAGTATGCGCTAAAGAATTCGGTTAcaaaggaaatttaaaaactcatATGGaGATACCAGACCAGCTTGAAAATGTAATAGAGTCCCAATTCGGAAAAGCTAAGTGGAGAAAAGCCAGTCCGGCAGAATTACCGCGATTATTATCGTGTCCCGATTGCGGTGCTGTGTTCAAGTACAAGTGCAACTTGACGACTCATTTGAAAGCTAAATGCGGCCAAAGGAAACCGTTCAAATGCGATGTTTGTTTTAAATCATTCGGTCGTAAACATACTTTACGAAGGCATATCCGATGTGTGCATAAAATagtacagaaaaaataa
- Protein Sequence
- MFSRRNQTNCDYSQRQLDFAKSSNNSFPCPNCTSSFKHKSSLKTHLQADCGKKKLFVCDICFKEFSYKSNLRTHMGFVRNQTENAGQDILQCPRCNSTFKYKSSLVTHLRVDCGKKKSFVCAVCTKEFSYKQSLKTHMGLVHKILIPQFRWMTKSDVPKSQNLFPCPNCSSVFKYKRNLYTHAKTECGHLRRQSSPAGLPKSPNKFPCPDCGSVFKYKGNLTTHLKTECGKKRSFVCEVCFKTFTYKHNLERHIILLHKISMFVSFQLYFSDHLFRTNINDGTSVWVTKNVEEFPPRSRGFSCPKCRSVFTMRQNLMHHLKLECSKVKKFKCEVCAKEFGYKGNLKTHMEIPDQLENVIESQFGKAKWRKASPAELPRLLSCPDCGAVFKYKCNLTTHLKAKCGQRKPFKCDVCFKSFGRKHTLRRHIRCVHKIVQKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150893;
- 90% Identity
- iTF_01150893;
- 80% Identity
- iTF_01150893;