Pmar016131.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01054793.1:367-4305[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0013 0.1 13.4 2.5 1 23 48 70 48 70 0.98 2 24 1.1e-05 0.0009 19.8 2.2 1 23 76 98 76 98 0.98 3 24 4.7e-05 0.0037 17.9 0.4 1 23 104 126 104 126 0.98 4 24 1e-05 0.00081 19.9 3.4 1 23 132 154 132 154 0.98 5 24 9.2e-06 0.00074 20.1 1.6 1 23 160 182 160 182 0.98 6 24 0.00033 0.026 15.2 0.7 1 23 188 210 188 210 0.99 7 24 0.0009 0.072 13.8 1.1 1 23 318 340 318 340 0.98 8 24 0.00012 0.0098 16.5 1.9 2 23 347 368 346 368 0.97 9 24 4.5e-05 0.0036 17.9 3.0 1 23 374 396 374 396 0.97 10 24 0.2 16 6.4 6.4 1 23 402 424 402 424 0.97 11 24 8.4e-07 6.7e-05 23.4 4.7 1 23 430 452 430 452 0.98 12 24 1.8e-05 0.0014 19.2 0.3 1 23 458 481 458 481 0.97 13 24 0.00071 0.056 14.1 2.6 1 23 721 743 721 743 0.99 14 24 0.0015 0.12 13.1 6.3 3 23 751 772 749 772 0.95 15 24 0.00026 0.02 15.5 1.9 1 23 778 800 778 800 0.95 16 24 3.3e-05 0.0027 18.3 4.7 1 23 806 828 806 828 0.98 17 24 5.7 4.6e+02 1.8 5.6 1 23 834 856 834 856 0.91 18 24 0.0013 0.1 13.3 0.9 1 23 861 883 861 883 0.98 19 24 2.4e-05 0.0019 18.8 3.2 1 23 898 920 898 920 0.98 20 24 0.054 4.3 8.2 5.3 1 23 926 948 926 948 0.97 21 24 5.5e-05 0.0044 17.6 0.2 1 19 954 972 954 974 0.97 22 24 0.55 44 5.0 5.7 1 23 982 1004 982 1004 0.98 23 24 0.00056 0.044 14.5 2.7 1 23 1010 1033 1010 1033 0.96 24 24 1.7e-05 0.0014 19.2 1.5 2 23 1039 1060 1038 1060 0.97
Sequence Information
- Coding Sequence
- atggaTAATTCGTTGCCGGAAGAAGACATTCCTCCAGCTCTACCAATTTTTCCGAAACTCGTTCATACCCTACCGAATTATCCAAACAAACAACCAGGACGGAAACCTAAAATCCCCGAGGATGAAAATACCGAAAGACCTTTCATGTGTGATCTCTGTGGTGCTActtttaaaataaagaaatgtcTAACTAGTCACGAACGTTCGCATACTGATGAACGTCCATATTCGTGCGCTATCTGCGGAGCTGCTTTCAAACACCGAcacaatttatcaaaacacGAACGCATTCACATCAACGAAAAACCATTCGTTTGCTCGTTTTGTGGTGGTAAATTCAGTCTTAAAGACACGCTCCAAAGGCATATGGCAATCCACACCggagaaaagaaatttaaatgcGAATTCTGCGACGCcacttttattcaaaaatttcacttgaaGTCTCATATGCGAGGCCATACCGGCGAGAAACCGTACGCTTGTGAATTCTGCGATGAAAAGTATACGAATAATACGTCTTTAAGGAATCATATGCGGTATCACGATGAAGTGAAACCGTATCGGTGTCGTTTTTGTACCGAAGGATTCAGATCGAAGATTGCTTTGTATGATCATATTAGAGTTCATACTACTTTAACTGGTtccgatttggaaaatttgatcaatgaACAGAAATTAAATACGACTGCGCCGATTAATATCTCTAATaaTGATCCTAAAGAAATCAAGCACTTACTGACGAAGGTAGAAACTCTGGTCGACGCGTCTTTAGAAACAGTGATGAACGTAGATTATGGAATTCAGCAAGTCGACACGCGAGTGAAAAACTTCTTGAAAAAGCAAATCGAAAGAAAAGCCGGAGGCTTCCGTAAACTGAAAAGACGCGCTGAAAAGTGTATAGACGATGCAGAacaatcgaaagaaaaatcacctAGGGAACCCAAAACGTACAAGTGCAAAATCTGCGATCAAGTGTTTCAATTACGCAAAGACATGGTGAAGCATAGGTCCATTCATTCTGAACCGGAAGAGCTAAAATGTTCGATTTGTGGCAAAGAATTCAGTACGAAACACGGTATATGGCAACATAACAAAACGCacgtcgtcgaaaaaaaattcatttgtgaTTATTGCTCGATGCCTTTCCGCACGAAATGCTCTCTACGTCGTCATATAATTCGTCACATAGGTATAACACGATATAAGTGTAGATTTTgtaagaagaaaatattccaaaaacacCATCTGGTAGTTCACGAAAGAGGTCACACCGGAGAAAAACCGTTCAAATGCCATATTTGCGATACCTCCTTCATTTCTAAAGGAAATTTACAGCATCACTTACGCAATCATTCTGACAAAAAACCGTTCCCTTGTCAATTTTGCGAAGAAGCTTTCAAAACCAGGTGGACCCTGAATGCTCATATTCGCAAAGAACATTCGGCTGTTCAAAATAACGTTCTACGTGGCGTTCCCGAAAAATTAGTCGTAACGCCTGAATTAGCCAACACTGCCCAAACAagtgataatgaaaaaaccgAAGAAAATAGTACAATTGAGACTGAAACCAAACTTGACGTTTCTGAAAGCAAAGAGAAACGTTCAGAAGTGGTAGATGAAGAAACTGACGACGATGATCATCTTTATGAAGTAACTCAAGAAGAGTTTTCAGAATATGAAGTTTCAGATCAAGAAGAAACTCAATCGGAAGAAACATTCGTATACAGTGCGATTCGAACTCGGAGCAGTGTCAATAAAGAGATGAATTCGAGGATTGATAAACACGAAGAAAAACTTGATGACGAAGAGGACAACAAGAAAAAAaataaaaagaataaaagaaaacaaactAAACCAAGATgtatcaaaaaatctaaatctgATGCTGGCACTGAAAACAACAACGATCACAGTGATGTCGATTCATCGttagaaaataaagaaaatgagATTTGCAAAGCTCAAGACACAGTTCCCGAAGGCTCAGACGGTGATATAATGAGCCCAAGAAGTATAGAAGACCTTCCAGTTGTTGAGAAGaaaagaaaatatacaaaatcCAGAAGGACTACGAAATCTAAAAAAGAAGCCAAACCCGCGACACGTAAACGTCGTTCTAAATCGGAAAAAGAACCTGAATCTAGTACTGACCGACCGTACAAATGTAAGAAATGCGATGCCACTTTCGCCATCAAGAAATGTTTGGTCAGCCATCAAATTACACACACCGAAGAAAAACTGCACCTTTGTTCATACTGCAGTGCGAGCTATAAACATAGGCACAATTTATTGAAACACATTCGAGTAAGCCACACAGACGAGAAACGTTTCTTGTGTAATTACTGCGGTGCTAAATTCGCTCTCAAAGATACGCTAGAGCGACACACTCATACTCATACGAACGAACGTCCATTCAAGTGCGAGTACTGTCAAGCAACGTTCAGCCAAAAGTATCATATAAGGATGCATATGCGGAATCATATGGGTGTTAATCCTTATCTTTGTAGGTTTTGTAATGCCACTTTTACTAATCATACCTCTCTCTCATGTCATCTACTTCAACACACCGGCCAAAGATTCGAATGCCCGATATGTCATTTAGAATTTAAATCCGGCCAGAGTCTCGGTCAGCACCGGAGATTACATTCGCCGGTCTCTAGTAAACGTTTTCAAACCTTCGACAAAATGTTCCAATGTGATACTTGTCATCAGTCGTATAAATCGAGAAGTACTTTGAAAGCTCACTTGATCTCGCACACGGACGAGAAACCCTATCGATGTTACATTTGCGATATGCAGTTCAAATATAGACGTAATTTGCAATGTCACGTCTTTACTCATACCGGAGAAAGACCCTATAAATGTGAAATATGCGGCACTGGATTCAGACAGAGGATTACTTTGAAAAGACATTCGTTGTGTCATACGAACGAGCGACCTTTCAAATGTGAATTCTGCGAGGCTACTTTTAAATGTAGAAAAACTCTCAACGAGCACCTTCACATTCACGACGGTGCCGGTGAATTCAAATGCGACCTATGCGATACTACCTTCAAGTTGAGGCGGTATTTGAGACAGCATGTGAATTACACGCATAATAAACTCCCGTCGGTTTGTACTATTTGCAAAGCTGTCTTTAAATACCGAAGATCTCTCAAACGACACATGCTAAAACATTCCGAAACTATGGAAATGAATAGTACGGATAATATTACGTATAATTTCCAATCGTCAGTATTGTGA
- Protein Sequence
- MDNSLPEEDIPPALPIFPKLVHTLPNYPNKQPGRKPKIPEDENTERPFMCDLCGATFKIKKCLTSHERSHTDERPYSCAICGAAFKHRHNLSKHERIHINEKPFVCSFCGGKFSLKDTLQRHMAIHTGEKKFKCEFCDATFIQKFHLKSHMRGHTGEKPYACEFCDEKYTNNTSLRNHMRYHDEVKPYRCRFCTEGFRSKIALYDHIRVHTTLTGSDLENLINEQKLNTTAPINISNNDPKEIKHLLTKVETLVDASLETVMNVDYGIQQVDTRVKNFLKKQIERKAGGFRKLKRRAEKCIDDAEQSKEKSPREPKTYKCKICDQVFQLRKDMVKHRSIHSEPEELKCSICGKEFSTKHGIWQHNKTHVVEKKFICDYCSMPFRTKCSLRRHIIRHIGITRYKCRFCKKKIFQKHHLVVHERGHTGEKPFKCHICDTSFISKGNLQHHLRNHSDKKPFPCQFCEEAFKTRWTLNAHIRKEHSAVQNNVLRGVPEKLVVTPELANTAQTSDNEKTEENSTIETETKLDVSESKEKRSEVVDEETDDDDHLYEVTQEEFSEYEVSDQEETQSEETFVYSAIRTRSSVNKEMNSRIDKHEEKLDDEEDNKKKNKKNKRKQTKPRCIKKSKSDAGTENNNDHSDVDSSLENKENEICKAQDTVPEGSDGDIMSPRSIEDLPVVEKKRKYTKSRRTTKSKKEAKPATRKRRSKSEKEPESSTDRPYKCKKCDATFAIKKCLVSHQITHTEEKLHLCSYCSASYKHRHNLLKHIRVSHTDEKRFLCNYCGAKFALKDTLERHTHTHTNERPFKCEYCQATFSQKYHIRMHMRNHMGVNPYLCRFCNATFTNHTSLSCHLLQHTGQRFECPICHLEFKSGQSLGQHRRLHSPVSSKRFQTFDKMFQCDTCHQSYKSRSTLKAHLISHTDEKPYRCYICDMQFKYRRNLQCHVFTHTGERPYKCEICGTGFRQRITLKRHSLCHTNERPFKCEFCEATFKCRKTLNEHLHIHDGAGEFKCDLCDTTFKLRRYLRQHVNYTHNKLPSVCTICKAVFKYRRSLKRHMLKHSETMEMNSTDNITYNFQSSVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00194595; iTF_01263810;
- 90% Identity
- -
- 80% Identity
- -