Pvib006504.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudococcus viburni
Gene Symbol
-
Assembly
GCA_033439095.1
Location
JAVBJF010000067.1:1017277-1021830[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.0012 0.11 13.4 2.5 1 23 48 70 48 70 0.98
2 24 6.4e-06 0.00062 20.5 3.1 1 23 76 98 76 98 0.98
3 24 4.4e-05 0.0042 17.9 0.4 1 23 104 126 104 126 0.98
4 24 9.9e-06 0.00095 20.0 3.5 1 23 132 154 132 154 0.98
5 24 8.7e-06 0.00084 20.1 1.6 1 23 160 182 160 182 0.98
6 24 0.0022 0.21 12.6 0.4 1 23 188 210 188 210 0.96
7 24 0.0015 0.14 13.1 3.2 1 23 318 340 318 340 0.98
8 24 2.1e-06 0.0002 22.1 4.9 1 23 346 368 346 368 0.99
9 24 3e-05 0.0029 18.4 3.1 1 23 374 396 374 396 0.97
10 24 0.48 47 5.2 5.7 1 23 402 424 402 424 0.96
11 24 3.2e-07 3.1e-05 24.6 2.2 1 23 430 452 430 452 0.98
12 24 2e-05 0.0019 19.0 0.5 1 23 458 481 458 481 0.97
13 24 0.0042 0.4 11.7 2.7 1 23 683 705 683 705 0.99
14 24 0.0014 0.13 13.2 6.3 3 23 713 734 711 734 0.95
15 24 0.00019 0.018 15.9 1.5 1 23 740 762 740 762 0.96
16 24 3.7e-05 0.0035 18.2 5.1 1 23 768 790 768 790 0.98
17 24 1.7 1.6e+02 3.5 5.4 1 23 796 818 796 818 0.92
18 24 0.00023 0.022 15.6 1.6 1 23 823 845 823 845 0.98
19 24 3.3e-06 0.00031 21.5 0.4 1 23 860 882 860 882 0.98
20 24 0.085 8.2 7.6 6.6 1 23 888 910 888 910 0.96
21 24 0.00012 0.012 16.5 0.2 1 19 916 934 916 936 0.96
22 24 0.22 21 6.3 5.7 1 23 944 966 944 966 0.98
23 24 0.001 0.098 13.6 3.2 1 23 972 995 972 995 0.93
24 24 5.2e-05 0.0051 17.7 0.9 2 23 1001 1022 1000 1022 0.97

Sequence Information

Coding Sequence
ATGAGTGATCCGGTACCAAACGAAGAATTCCCACCAGCTTTACCAATTTTCCCCAAACTCACTCATATATTGCCAAATTACCCCAACAAACAACCAGGTCGAAAACCCAAAATAGCCGAAGATGAAAACACCGAAAGACCTTTCATGTGTGATCTCTGCGGAGCCACtttcaaaataaagaaatgTCTCACCTCTCACGAACGTTCTCACACCGACGAGCGTCCGTACTCCTGTTCAATCTGCGGCGCGGCTTTCAAACACCGACACAACTTATCCAAACATGAGCGAATCCACATCAATGAGAAACCATTCGTTTGCTCCTTCTGCGGAGGTAAATTTAGCCTCAAAGATACGCTCCAAAGGCACATGGCTATTCACACCGgcgaaaagaaattcaaatgcGATTTCTGCGACGCTacgtttattcaaaaattccactTGAAATCTCACATGCGAGGGCATACTGGTGAGAAACCTTATGCTTGCGAGTTCTGCGATGAGAAGTATACAAATAATACTTCTCTGAGGAATCATATGCGATATCACGATGAAGTGAAACCGTATCTGTGTCGGTTTTGCAGCGAAGGATTTAGATCAAAAATTGCTCTATATGATCATATCAGAGTGCATACCACTTTGACCGGAtctgatttggaaaatttgatcaatgagCAGAAATTGAACGCTCCTGAGCCTGTTATTATATCAAATaatgaTCCAAAAGAAATCAAACATTTATTAACGAAAGTTGAGACTTTGGTCGATGAATCTTTAGACACCGTGATGAACGTAGATTATGGAATACAACAAGTAGACACAACGGTGAAAAACTTcctgaaaaaacaaatcgaacgaaaagCCGGAGGCTTCCGCAAGCTAAAAAGACGCGCTGAAAAATGCATCGAGAAACCAGACAGGCCAAAATCTCAAACTCCCAAGACTCCGAAAATCTACACCTGCAACATCTGCAACCACGTATTCCAACTACGAAAAGATCTCGTCAAACACAAATCAACTCACTCGTTACCGGAAATCTATAAATGTTCGATTTGTGGCAAAGACTTCACCACGAAGCACAGTCTGAAACAACACAATAAAACACACAtcgtcgagaaaaaattcatttgcgATTATTGTCAAATGCCTTTTCGAACCAAATGCTCTCTACGTCGTCATATAATTCGTCATCTGGGCATAACTCGATACAAATGCAGGTtctgtaaaatgaaaatattccagAAACATCACCTGATTGTTCACGAAAGGGGCCACACCGGAGAGAAACCCTTCAAGTGCGATATCTGCGATACTTCGTTCATATCGAAAGGCAATTTACAGCATCATTTGAGGAATCATTCGGATAAGAAACCGTTTCCTTGCCAGTTCTGTAGCGAAGCTTTCAAAACAAGGTGGACGTTGAATGCTCATATTCGCAAAGAACATTCCACTATTCAGAATAAAGATGTGTTGCCCTGTGTACCTGAGAAAGTAGTCGTAACGccggaattttccaaaaataagaaTTCGaagaaaaatgaaactaaCGAAGATATGCCTGCcaataaagaaaatgaaattaagaCTCAGATTGAACATCACGAACCTGCGAgggaagaaaaacaaaataatgagGCGAATTATGAAACTGACGATGATGATCATCTTTATGAGgtgaCTCAAGAAGAGATTTCTGAGTATGAACCTTCAGAGGAAGAAAAAGAAACGGAATCAGAACCGACTCCTGTACTTAATAATATTCGCACTAGAAGGAGTTACATTAAAAATACTAATTCGAGTACTGAGCAGCTCGAGTCAAAACTTAGTGACGATGAGGATAAGAAAAAGATTTACGAAACACGAGATGCAACAGCCGAAGAATCAGACGAAAACATAAAGAACTCCGATGACATAGCCAACATACCGATTGTTGAAAAaAAGAAAAAAGCTACGAAATCTGCGAAAACTGCCAAAAAACCAGCCAAAACTGCGAAACGCAAACGTCGATCAAAATCAAGCCCAGAACCTGTATCGAACACCGATCGACCTTACAAATGCAAACAATGCTCTGCCACTTTTGCCATTAAAAAATGTCTGGTCAGCCACCAAATTACCCATACGGAGGAAAAACTCCACCTATGTTCATATTGCAGTGCCAGCTACAAACACAGGCATAATTTACTCAAACATATTCGAGTCAGCCATACCGATGAGAAACGTTACCTGTGCAACTATTGCGGTGCTAAATTCGCTTTGAGAGATTCTCTGGAACGTCATACCCATACTCATACGAACGAAAGACCATTCAAGTGTGAATATTGTAAGGCGACGTTTAGTCAGAAATATCACATAAGAATGCATATGCGAAACCATATGGGCAATAATCCGTATTTATGCACTTTCTGCAACGCAACGTTTACGAATCATACTTCGCTATCGTGTCATTTACTGCAGCACACAGGTCAGAGATTCGAATGCCCAGTTTGCCATTTAGAATTTAAATCCAGACAGAGCCTGGGGCAACACCGAAGGCTGCATTCGCCGGTACAAAATAAACGTTTCCAAACGTTCGATAAACTTTTCCAATGTGATATTTGTAATCTGTCGTATAAATCGAGGAGTACTCTGAAAGCTCATTTAATCGTTCATACGGATGAAAAACCCCACCAGTGTTACATTTGCGGAATGCAGTTCAAATACAGACGTAATTTGAAATGCCACGTTTATACCCATACTGGAGAAAGACCTTACAAATGCGAAGTCTGCGGTACCGGTTTTAGGCAAAGGGTTAGTTTGAAGACACACTCTCTCTGCCATACGAACGAACGCCCTTTCAAATGTGAATTTTGCGAAGCCACgttcaaatgtaaaaaatctcTCAATGAACATCTACATATTCACGACGGAGCCAGTCAATTTAAATGCGAACAATGCGATACTACGTTCAAGCTGAAACGATATTTAAGGCAGCATGTTTATTATTCCCACAGCAAGCCTCCGTCCGTGTGTACGGTTTGTAAAGCTGTATTCAAGTATGAGCGATCTCTCAAACGTCACATGCTTAAACATTACGATAATGTTGATCCAAACAATACGCAAATGGCGTATAATTATAATTAG
Protein Sequence
MSDPVPNEEFPPALPIFPKLTHILPNYPNKQPGRKPKIAEDENTERPFMCDLCGATFKIKKCLTSHERSHTDERPYSCSICGAAFKHRHNLSKHERIHINEKPFVCSFCGGKFSLKDTLQRHMAIHTGEKKFKCDFCDATFIQKFHLKSHMRGHTGEKPYACEFCDEKYTNNTSLRNHMRYHDEVKPYLCRFCSEGFRSKIALYDHIRVHTTLTGSDLENLINEQKLNAPEPVIISNNDPKEIKHLLTKVETLVDESLDTVMNVDYGIQQVDTTVKNFLKKQIERKAGGFRKLKRRAEKCIEKPDRPKSQTPKTPKIYTCNICNHVFQLRKDLVKHKSTHSLPEIYKCSICGKDFTTKHSLKQHNKTHIVEKKFICDYCQMPFRTKCSLRRHIIRHLGITRYKCRFCKMKIFQKHHLIVHERGHTGEKPFKCDICDTSFISKGNLQHHLRNHSDKKPFPCQFCSEAFKTRWTLNAHIRKEHSTIQNKDVLPCVPEKVVVTPEFSKNKNSKKNETNEDMPANKENEIKTQIEHHEPAREEKQNNEANYETDDDDHLYEVTQEEISEYEPSEEEKETESEPTPVLNNIRTRRSYIKNTNSSTEQLESKLSDDEDKKKIYETRDATAEESDENIKNSDDIANIPIVEKKKKATKSAKTAKKPAKTAKRKRRSKSSPEPVSNTDRPYKCKQCSATFAIKKCLVSHQITHTEEKLHLCSYCSASYKHRHNLLKHIRVSHTDEKRYLCNYCGAKFALRDSLERHTHTHTNERPFKCEYCKATFSQKYHIRMHMRNHMGNNPYLCTFCNATFTNHTSLSCHLLQHTGQRFECPVCHLEFKSRQSLGQHRRLHSPVQNKRFQTFDKLFQCDICNLSYKSRSTLKAHLIVHTDEKPHQCYICGMQFKYRRNLKCHVYTHTGERPYKCEVCGTGFRQRVSLKTHSLCHTNERPFKCEFCEATFKCKKSLNEHLHIHDGASQFKCEQCDTTFKLKRYLRQHVYYSHSKPPSVCTVCKAVFKYERSLKRHMLKHYDNVDPNNTQMAYNYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01150633;
90% Identity
-
80% Identity
-