Bdim011245.1
Basic Information
- Insect
- Balanococcus diminutus
- Gene Symbol
- -
- Assembly
- GCA_959613365.1
- Location
- OY390716.1:47876673-47883037[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0012 0.093 13.4 2.5 1 23 48 70 48 70 0.98 2 24 6.5e-06 0.00051 20.5 3.1 1 23 76 98 76 98 0.98 3 24 4.5e-05 0.0035 17.9 0.4 1 23 104 126 104 126 0.98 4 24 1e-05 0.00078 19.9 3.5 1 23 132 154 132 154 0.98 5 24 8.8e-06 0.00068 20.1 1.6 1 23 160 182 160 182 0.98 6 24 0.00032 0.025 15.2 0.7 1 23 188 210 188 210 0.99 7 24 0.00032 0.025 15.2 1.0 1 23 320 342 320 342 0.98 8 24 3.6e-06 0.00028 21.3 4.6 1 23 348 370 348 370 0.98 9 24 0.00016 0.013 16.1 3.0 1 23 376 398 376 398 0.97 10 24 0.49 38 5.2 5.7 1 23 404 426 404 426 0.96 11 24 9.1e-07 7.1e-05 23.2 1.8 1 23 432 454 432 454 0.98 12 24 0.00014 0.011 16.3 0.2 1 23 460 483 460 483 0.97 13 24 0.002 0.16 12.7 2.5 1 23 685 707 685 707 0.99 14 24 0.00094 0.073 13.7 7.3 3 23 715 736 713 736 0.95 15 24 0.00024 0.019 15.6 1.9 1 23 742 764 742 764 0.95 16 24 6.2e-05 0.0048 17.5 4.6 1 23 770 792 770 792 0.98 17 24 1.7 1.3e+02 3.5 5.4 1 23 798 820 798 820 0.92 18 24 0.00024 0.018 15.6 1.6 1 23 825 847 825 847 0.98 19 24 0.00012 0.009 16.6 0.5 1 23 864 886 864 886 0.95 20 24 0.04 3.1 8.6 6.9 1 23 892 914 892 914 0.97 21 24 4.3e-05 0.0033 18.0 0.3 1 19 920 938 920 940 0.97 22 24 0.23 17 6.3 5.7 1 23 948 970 948 970 0.98 23 24 0.0011 0.084 13.5 3.3 1 23 976 999 976 999 0.93 24 24 5.3e-05 0.0041 17.7 0.9 2 23 1005 1026 1004 1026 0.97
Sequence Information
- Coding Sequence
- ATGGATAATCCGTTGCCGGGTGAAGACATTCCCCCAGCTCTACCAATTTTCCCGAAACTCGTTCATACATTACCAAATTATCCGAACAAACAACCTGGACGAAAACCCAAAGTACCCGAAGATGAAAACACCGAAAGACCTTTCATGTGTGATCTCTGCGGCGCTacatttaaaataaagaaatgtcTGACTAGTCATGAACGTTCTCACACCGATGAGCGTCCATATTCGTGCTCAATCTGCGGAGCTGCTTTCAAACACAGGCATAATTTATCCAAACATGAGCGAATTCACATCAACGAAAAGCCCTTCGTTTGCTCGTTTTGTGGCGGTAAATTCAGTCTCAAAGATACACTTCAGAGGCACATGGCCATTCATACCggtgaaaagaaattcaaatgtGATTTCTGCGACGCtacatttattcaaaaattccatctcaaGTCTCATATGCGAGGTCATACCGGCGAGAAACCGTACGCTTGTGAATTCTGCGACGAAAAGTATACGAATAATACGTCTTTGCGGAATCATATGCGGTATCATGATGAAGTGAAACCGTATCGGTGTCGTTTTTGCACCGAAGGGTTCAGATCAAAGATTGCTTTGTATGATCATATTCGAGTACATACAACTTTAACTGGCTctgatttggaaaatttaatcaacgaGCAGAAATTGAATAGTGCTGAACCAGTTAATTTGCCTAACAATGATCCAAAAGAAATCAAACATTTGCTGACGAAGGTTGAAACTTTGGTCGATGCATCTCTAGAAACTGTCATGAACGTAGATTATGGAATTCAACAAGTCGACACTCGAGTAAagaacttcttgaaaaaacaaatcgaAAGGAAAGCAGGAGGATTCCGTAAACTGAAAAGACGCGCTGAGAAAtgtatagaaaaaatgaaaccagaACAATCTAAAGAAAAGACCCCGAAAGAGCCCAAAACATACACTTGCAACATCTGCAACCAAGTCTTTCAACTGCGGAGAGACCTACTGAAACATAGATCAGTTCATCCTGAACTCGAACAATTCAAGTGTTCAATTTGCGGCAAAGAATTCAACACGAAACACAGCTTGACTCAACACAATAAAACTCACATAGTggaaaagaaattcatttgTGATTATTGCTTGACGCCTTTCCGAACGAAATGCTCTCTACGTCGTCATATAATTCGCCATCTAGGTATAACGCGTTATAAATGCAGAttctgtaaaatgaaaatattccagaAACACCACCTGATAGTTCACGAAAGAGGTCACACCGGAGAAAAGCCCTTCAAATGCGATATCTGCAATACAGCTTTCATTTCTAAGGGGAATTTACAACATCATTTGCGTAATCATTCGGATAAGAAACCGTTCGCTTGTCAGTTGTGCAAAGAAGCCTTTAAAACCAGATGGGTGCTGAATGCTCATATTCGTAAAGAGCATTTGGACGTGGAAAATAACGTTTTACCTGGTgctcctgaaaaattggttGTGACGCCGGAATTCGATAACACTGATGATACAAGTAAGAGTAAAAGCAATGACGAAGATAATACAATTGAGACTGAAATAAAACACAATGTTCCTGAAGACGGAGAAAAAcagcaaaaagttgaaaatgaagaaagtgACGATGATGATCATCTTTATGAGgtTACTCAAGAAGAATTTTCTGAGTATGAAGTTTCCGACAAAGAAGAATCTCATTCGGAAGATAAATTTGAATATAGTGCGTATCGAACACGAAGCAATGCCAATAGAGAAATCAATAAAGAGATCAATCTGAGCATCGataaacttgaagaaaaactcaGTGACGAACAGGACAGTAAGAAAAAGAATTACGAGACTCAAGATCCAATCCCCGAAGATTCAGACGATAACGTGATGAGCCCAGAACCCGTAGAAGATGTTCCAGTTGTCGTGAAAaaaagaaaatacacaaaatctgacaaaaccACGAAACGTAAAAAAAGCACCAAAACAACCGCACGAAAATCGCGTCCTAAATCGAAAAAGGAACCTGTATCGAAGACCGACCGACCCTACAAATGCAAAAGATGCGACGCCACTTTCGCCATAAAAAAATGCCTAGTTAGCCATCAAATCACCCACACCGAAGAAAAACTCCACCTGTGTTCTTACTGCAGTACGAGTTATAAACACAgacataatttattaaaacataTTCGAGTCAGCCACACAGACGAGAAACGTTTCCTGTGCAATTATTGCGGCGCTAAATTCGCACTCAAGGATACCCTCGAACGTCACACACATACTCACACCAACGAGCGTCCCTTCAAGTGCGAATATTGTAAGGCAACGTTTAGTCAAAAATACCACATAAGGATGCATATACGAAATCACATGGGCGATAATCCCTATCTTTGTACATTTTGCAATGCAACTTTTACGAATCATACCTCCCTATCGTGTCATCTGCTGCAGCACACAGGTCAAAGATTCGAATGCCCTGTTTGCCATTTGGAATTCAAATCGAGACAGAGTCTCGGGCAACACAGAAGATTACATTCTCCGGTCCAGAATAAACGTTACAGGAGTCAGAATTTCGACAAAACGTACCAATGTGATATTTGCCAACTGATGTATAAATCGAGAAGTACATTGAAAGCTCATTTCATCGCTCACACCGACGAAAAGCCTCACCAATGTTACATATGCGGTATGCAGTTCAAATACAGACGTAATTTGAAATGCCACATCTTCACCCATACCGGAGAAAGACCCTATAAATGTGAAATCTGCGGAACCGGTTTCAGACAAAAAGTTAGTTTGAAAACGCACTCTTTGTGTCATACAAACGAACGACCATTCAAATGCGAATTTTGCGAGGCTAcctttaaatgtaaaaaatcactcaacgAGCATTTGCACATTCACGATGGCGCCAGCCAATTCAAATGTGACCAATGTGACACTACTTTTAAACTGAAACGATATTTGAGGCAGCACGTGTATTATTCTCATAGCAAACCTCCGTCTGTTTGTACCGTTTGTAAAGCTGTTTTCAAATACGAAAGATCTCTTAAACGTCACATGCTTAAACATTCCGATCAAGTTGAAGTCAACAATGCGAATAATATtacgtataattttcaatcgtCGATATTGCCATAA
- Protein Sequence
- MDNPLPGEDIPPALPIFPKLVHTLPNYPNKQPGRKPKVPEDENTERPFMCDLCGATFKIKKCLTSHERSHTDERPYSCSICGAAFKHRHNLSKHERIHINEKPFVCSFCGGKFSLKDTLQRHMAIHTGEKKFKCDFCDATFIQKFHLKSHMRGHTGEKPYACEFCDEKYTNNTSLRNHMRYHDEVKPYRCRFCTEGFRSKIALYDHIRVHTTLTGSDLENLINEQKLNSAEPVNLPNNDPKEIKHLLTKVETLVDASLETVMNVDYGIQQVDTRVKNFLKKQIERKAGGFRKLKRRAEKCIEKMKPEQSKEKTPKEPKTYTCNICNQVFQLRRDLLKHRSVHPELEQFKCSICGKEFNTKHSLTQHNKTHIVEKKFICDYCLTPFRTKCSLRRHIIRHLGITRYKCRFCKMKIFQKHHLIVHERGHTGEKPFKCDICNTAFISKGNLQHHLRNHSDKKPFACQLCKEAFKTRWVLNAHIRKEHLDVENNVLPGAPEKLVVTPEFDNTDDTSKSKSNDEDNTIETEIKHNVPEDGEKQQKVENEESDDDDHLYEVTQEEFSEYEVSDKEESHSEDKFEYSAYRTRSNANREINKEINLSIDKLEEKLSDEQDSKKKNYETQDPIPEDSDDNVMSPEPVEDVPVVVKKRKYTKSDKTTKRKKSTKTTARKSRPKSKKEPVSKTDRPYKCKRCDATFAIKKCLVSHQITHTEEKLHLCSYCSTSYKHRHNLLKHIRVSHTDEKRFLCNYCGAKFALKDTLERHTHTHTNERPFKCEYCKATFSQKYHIRMHIRNHMGDNPYLCTFCNATFTNHTSLSCHLLQHTGQRFECPVCHLEFKSRQSLGQHRRLHSPVQNKRYRSQNFDKTYQCDICQLMYKSRSTLKAHFIAHTDEKPHQCYICGMQFKYRRNLKCHIFTHTGERPYKCEICGTGFRQKVSLKTHSLCHTNERPFKCEFCEATFKCKKSLNEHLHIHDGASQFKCDQCDTTFKLKRYLRQHVYYSHSKPPSVCTVCKAVFKYERSLKRHMLKHSDQVEVNNANNITYNFQSSILP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150633;
- 90% Identity
- -
- 80% Identity
- -