Pxut007227.1
Basic Information
- Insect
- Papilio xuthus
- Gene Symbol
- -
- Assembly
- GCA_000836235.1
- Location
- NW:7911783-7921872[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00031 0.018 15.2 0.2 2 23 136 157 135 157 0.93 2 11 0.00045 0.026 14.7 2.4 1 23 163 185 163 185 0.96 3 11 0.00011 0.0061 16.7 0.6 1 23 281 303 281 303 0.98 4 11 3.1 1.7e+02 2.6 0.0 2 23 310 332 309 332 0.84 5 11 0.00095 0.054 13.7 0.0 2 23 377 399 376 399 0.90 6 11 0.00093 0.053 13.7 0.0 1 23 424 446 424 446 0.92 7 11 2.4e-05 0.0014 18.7 0.2 1 23 476 498 476 498 0.98 8 11 0.00048 0.027 14.6 0.2 1 23 504 526 504 526 0.97 9 11 0.0015 0.085 13.1 0.3 3 23 534 554 532 555 0.95 10 11 0.0056 0.32 11.3 0.4 1 23 568 590 568 590 0.97 11 11 0.015 0.83 9.9 0.1 1 20 758 777 758 780 0.93
Sequence Information
- Coding Sequence
- ATGGAGGCATCAGTTGATTTCAACCTCCATTGGGAGGAGGTTGTGATAAAGAACTCTCCCAAACATGAAAATGAGACAATGTGCAACCTTGATAGTGTACAAAGCTATTCAACAATGaCATCTGAAGAGATAATAGCAGATACAGATCAAATGGCTGCAGAAAATCTGATGTTTCTATCGCAGGATGTAGTTGGTTATACAGAACCGGTATTGCCAGATGAATTGAACGTTGAATGTGTCACTGAAGAAGTTATAACTGATGATTGGGTACTAGCTGGAGGACAGGAAAGaGTGGAAGTACCTATGGAGCAATTAGTACATAATGTGTCTGATGTGAAAGTTGAAAATGATATTGATGTCCCATTACCAACTGATCAGGACCAGTACACAGCGATGAGGCCGTGGCCGTGCGACTTCTGCTCGAGACGGTTCCGCAAGAAGGCGGCCCTCATGAACCACATGGTGGCGCACCAGAATGACAGGCCGCATGCGTGCAACTTGTGCGGCGTGCGGTACGTGCGCAAGTGTGATCTCATGAACCACCTGAAGGTGCACGCCTTTGTACCCGACAACCATGATACCATGGATTATGATGACGTTATTAATAACAGTCCATTATTAAAGCCAAAGAAAAAAAGGggacgaagaaaaaaaaatccggaACCAGAAGAGGATGGTGTGTGGGAGAACATGACGTCAGCGCGCACGCAGCAGTGGCAGCGGCGTGCACGTACACCCGTGCGTCGCTCCCCCTCCCCGCCATCTGAACCGGACCCACCCCCTGAACCCTCGCCGCCTTCCCCGCCCTCACCCCTACCACCCACAGACCCCTCACGACCATTTGTATGTCGTCATTGCGGGGTCGGCTTCGCAAGAGAGAAGGCGTTGCAGTCACATTCTAGAATCCACGGCGGAGACTCACCAGTGGAGTGCGGCGATTGCGGCGAGCTGTACTGGTCGCGCGAAGCGCTCGCAGCGCACGCCGCACACAAACACCCGCATGCTGCTCCACGCGCACGACGAGACCCCTCTTACGAACTCTCAAACTCAGacGATGACTATGACTACCGCATGTCGCTGGAGTCGAGCAGTGAACGCACGGGGTACGAGGCCCGCGGGCCCGAGCTGCGCTGCCAGGACTGCGGAGTCGCTTTCCAGCGTGTTGACTTGTTGCGTCGTCACGTCGCTGCCGCTCACaaTTATAAGCGGCATGATAGCACGAGCAGTGCTGGAGGTGGCGGTGGTGGCGGCGCATGGGGGTGGGGCGAGCACGCGTGTGACGTGTGCGGCGAGACATTCGCAGATCCGCTGCAGCTGCTTGCGCATGCTGAGGGCCATGCGGAACGACACCGGCCCAATTCCACCAGATTAAAAAGAATGGGTCGCGGCAAGACCACCACGGCATCTTCTAATAACTCGAGACAGTTTCCTTGTAGAGAGTGCGGCAAGGTGTTTGGTTCGCGCAGCTCGCAGCAGATCCATGTGCGTATTCACACGGGCGAGCGACCGTACGCGTGCCGCTTCTGCTGGAAGGCCTTCGCGGATGGCGGCACGTTGCGCAAGCACGAGCGCATACACACCGGTGAGAAGCCGTACGGATGTGCGGTGTGCCCGCGCGCGTTTAACCAGCGTGTCGTGTTGCGCGAACATGTTCGCTCCCACCACTCCGCGCCCAACAGACGCACCAACGGCAGCAACGTGTATACGTGCGTAGTTTGCGACCGCACGCTGCACTCTAGTGTGGAGCTGGTGCAGCACCTCATACAGCACTGCGACGCCAATACCGCCCTCAAACGGCAGCCGCAGAACGGCCCTCGGAAGTACAAGCGGCGGCGGAAATTGAAAACTGAACTTGTGTCGCCGAAACGTGAATGGGAGGAGCCTGAGCGTGCGTCCTCCCCCTCCGCCGCATCGGGTGCTTCCCGCTCCCCACCACGTGCCTCTCCGCCGCCCTCACCTCCGCGTCGTCTCGCCTCCCCGCCACGCCGCGCCCCACCACCTCCACGCCGGCGACGTCGCCGCGCACCCCCTGCGCCGCCCCGTCCTCGCATGATACACACCGAGGAGGCCAGGCCCAGGACTAAGCAAGTGCGCGGCCGCAAATCGCCGAGGCAGCCCGCTGACGACTTGCGCGCAATCGCCGTGCCCGCCTCGCCGGCCTCCCCTTCCCCGCCGTCGCCACCCTCGCCGAGCATGGCGCACGCATCCCCCGACTCCCCCGACACGATGTCTCCGCGCTCAACGCATTCTCCCCACTCCCCGGCTGGGCCGTTCAAGTGCGAGATGTGCTCGCTGGAGTTCGAGGACCGCGACGCTCTTCTGTTGCACGTGCCTGTACACATTTGA
- Protein Sequence
- MEASVDFNLHWEEVVIKNSPKHENETMCNLDSVQSYSTMTSEEIIADTDQMAAENLMFLSQDVVGYTEPVLPDELNVECVTEEVITDDWVLAGGQERVEVPMEQLVHNVSDVKVENDIDVPLPTDQDQYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNHDTMDYDDVINNSPLLKPKKKRGRRKKNPEPEEDGVWENMTSARTQQWQRRARTPVRRSPSPPSEPDPPPEPSPPSPPSPLPPTDPSRPFVCRHCGVGFAREKALQSHSRIHGGDSPVECGDCGELYWSREALAAHAAHKHPHAAPRARRDPSYELSNSDDDYDYRMSLESSSERTGYEARGPELRCQDCGVAFQRVDLLRRHVAAAHNYKRHDSTSSAGGGGGGGAWGWGEHACDVCGETFADPLQLLAHAEGHAERHRPNSTRLKRMGRGKTTTASSNNSRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYGCAVCPRAFNQRVVLREHVRSHHSAPNRRTNGSNVYTCVVCDRTLHSSVELVQHLIQHCDANTALKRQPQNGPRKYKRRRKLKTELVSPKREWEEPERASSPSAASGASRSPPRASPPPSPPRRLASPPRRAPPPPRRRRRRAPPAPPRPRMIHTEEARPRTKQVRGRKSPRQPADDLRAIAVPASPASPSPPSPPSPSMAHASPDSPDTMSPRSTHSPHSPAGPFKCEMCSLEFEDRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01142566;
- 90% Identity
- iTF_01147561; iTF_01144753; iTF_01142566; iTF_01141101; iTF_01149008;
- 80% Identity
- -