Basic Information

Insect: Papilio polytes
Gene Symbol: -
Assembly: GCA_000836215.1
Location: NW:3226606-3235813[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00023 0.012 15.5 0.2 2 23 140 161 139 161 0.93

2 10 0.00033 0.017 15.0 2.4 1 23 167 189 167 189 0.96

3 10 7.7e-05 0.004 17.0 0.6 1 23 285 307 285 307 0.98

4 10 3.3 1.7e+02 2.4 0.0 2 23 314 336 313 336 0.84

5 10 0.00069 0.036 14.0 0.0 2 23 385 407 384 407 0.90

6 10 0.00068 0.035 14.0 0.0 1 23 433 455 433 455 0.92

7 10 1.8e-05 0.00091 19.0 0.2 1 23 485 507 485 507 0.98

8 10 0.00035 0.018 14.9 0.2 1 23 513 535 513 535 0.97

9 10 0.0011 0.056 13.4 0.3 3 23 543 563 541 564 0.95

10 10 0.004 0.21 11.6 0.4 1 23 577 599 577 599 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00023	0.012	15.5	0.2	2	23	140	161	139	161	0.93
2	10	0.00033	0.017	15.0	2.4	1	23	167	189	167	189	0.96
3	10	7.7e-05	0.004	17.0	0.6	1	23	285	307	285	307	0.98
4	10	3.3	1.7e+02	2.4	0.0	2	23	314	336	313	336	0.84
5	10	0.00069	0.036	14.0	0.0	2	23	385	407	384	407	0.90
6	10	0.00068	0.035	14.0	0.0	1	23	433	455	433	455	0.92
7	10	1.8e-05	0.00091	19.0	0.2	1	23	485	507	485	507	0.98
8	10	0.00035	0.018	14.9	0.2	1	23	513	535	513	535	0.97
9	10	0.0011	0.056	13.4	0.3	3	23	543	563	541	564	0.95
10	10	0.004	0.21	11.6	0.4	1	23	577	599	577	599	0.97

Sequence Information

Coding Sequence: ATGGAGACGTCAGGAGTTGATTTCAACCTCCATTGGGAGGAGGTTGTGATTAAgAATTTCCAGAACTCCCCCAAACATGAGAGTGACACAATGTGCAACCTTGAAAATGTACAAAGCTATTCAGCAATGACATCTGAAGAGATAAAAGCAGATACAGATCAAATGGCGGCAGAGAATCTGATGTTTCTATCACAAGATGTGGTTGGTTACACAGAAGCAGTATTGCCAGATGAATTGAATGTAGAATGTGTGACAGAAGAGGTGATAACTGATGATTGGGTTCTAGCCGGTGGACAGGAGAGagTGGAGGTGCCCATGGAGCAATTAGTACATAATGCTTTAGATGTGAAAGTAGAAAATGATATTGACGTCCCTTTACCAACTGATCAGGATCAGTACACGGCGATGCGGCCGTGGCCATGTGATTTCTGTTCGCGTCGGTTCCGTAAGAAGGCGGCGCTGATGAACCACATGGTGGCGCACCAGAGCGACCGTCCGCACGCCTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGCGATCTCATGAACCACCTCAAAGTGCACGCCTTTGTACCAGATAACCATGATACAATGGATTATGACGATGTTATTAATAACAGTCCATTAATAAAGCCAAAGAAAAAAAGAGgacgaagaaaaaaaaatccggAACCAGAAGAGGATGATATGTGGGAGAATATGACGTCTGCGCGCACGCAGCAGTGGCAGCGACGCGCGCGCACGCCCGTGCGGCGCTCCCCCTCCCCGCCCTCGGAGCCAGACCCGCCCCCCGCGCCCTCGCCGCCCTCCCCGCCCTCGCCCCTGCCGCCCGCAGACCCCTCGCGCCCCTTTGTCTGCCGGCACTGCGGCGTCGGCTTCGCGAGGGAGAAGGCGCTACAGTCACATTCTAGGATCCACGGCGGCGACTCGCCAGTGGAGTGCGGTGAGTGCGGTGAGCTGTACTGGTCGCGCGAGGCGCTGGCCGCGCACGCCGCGCACAAGCACCCGCACGCGGCGCCGCGCGCCCGCAGGGACCCCTCCTACGAACTCTCCAACTCGGACGAGGACTACGACTACCGCATGTCGCTGGAGGGCGAGGGCGAGGGCGAGGGCGGGGAGCGCGCGGGGTGCGGGCGCGGGCCGGAGCTGCGCTGCCAGGACTGCGGCGTCGCCTTCCAGCGCGTCGACCTGCTGCGACGACACGTCGCCGCCGCACACAActaCAAGCGTCACGACAGCACGAGCAGCGCGGGGGGTGGGGGCGGTGCGGGCGGCACGTGGGGGTGGGGCGAGCACGCGTGCGACGTGTGCGGCGAGACGTTCGCAGACCCGCTGCAGCTGCTCGCGCACGCGGAGGGCCACGCGGAGCGACACCGCCCCAGCGCCAACAGattaaaaagaatGGGTCGCGGCAAAACTAGTGCGACAGCTTCAAATAACTCGAGGCAGTTTCCATGTAGAGAGTGCgGCAAGGTGTTCGGTTCGCGCAGCTCGCAGCAGATCCACGTGCGCATCCACACGGGCGAGCGGCCCTACGCCTGCCGCTTCTGCTGGAAGGCCTTCGCCGACGGCGGCACGCTGCGCAAACACGAGCGCATACACACCGgTGAGAAGCCGTACGGATGTGCAGTATGCCCACGCGCCTTCAACCAGCGCGTGGTGCTGCGGGAACACGTGCGCTCACACCACTCTGCACCCAACAGACGCACCAACGGCAACAACGTGTACACATGTGTGGTGTGCGACCGCACGCTGCACTCTAGCGTGGAGTTGGTACAGCACCTCATACAGCACTGCGACGCCAACACCGCGCTCAAGCGGCAACCGCAGAACGGTCCTCGGAAGTACAAACGGCGGCGGAAATTGAAAACCGAACTGCTGTCGCCGAAACGCGAGTGGGAGGAGAACcaataa
Protein Sequence: METSGVDFNLHWEEVVIKNFQNSPKHESDTMCNLENVQSYSAMTSEEIKADTDQMAAENLMFLSQDVVGYTEAVLPDELNVECVTEEVITDDWVLAGGQERVEVPMEQLVHNALDVKVENDIDVPLPTDQDQYTAMRPWPCDFCSRRFRKKAALMNHMVAHQSDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNHDTMDYDDVINNSPLIKPKKKRGRRKKNPEPEEDDMWENMTSARTQQWQRRARTPVRRSPSPPSEPDPPPAPSPPSPPSPLPPADPSRPFVCRHCGVGFAREKALQSHSRIHGGDSPVECGECGELYWSREALAAHAAHKHPHAAPRARRDPSYELSNSDEDYDYRMSLEGEGEGEGGERAGCGRGPELRCQDCGVAFQRVDLLRRHVAAAHNYKRHDSTSSAGGGGGAGGTWGWGEHACDVCGETFADPLQLLAHAEGHAERHRPSANRLKRMGRGKTSATASNNSRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYGCAVCPRAFNQRVVLREHVRSHHSAPNRRTNGNNVYTCVVCDRTLHSSVELVQHLIQHCDANTALKRQPQNGPRKYKRRRKLKTELLSPKREWEENQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01139142;
90% Identity: iTF_01149790;
80% Identity: -