Basic Information

Insect: Papilio protenor
Gene Symbol: -
Assembly: GCA_029286645.1
Location: JAGSMZ010000020.1:3357837-3365250[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00036 0.032 15.2 0.2 2 23 137 158 136 158 0.93

2 11 0.00053 0.046 14.7 2.4 1 23 164 186 164 186 0.96

3 11 0.00013 0.011 16.7 0.6 1 23 282 304 282 304 0.98

4 11 5.3 4.6e+02 2.1 0.0 2 23 311 333 310 333 0.83

5 11 0.00022 0.019 15.9 0.0 2 23 381 403 380 403 0.90

6 11 0.0011 0.096 13.7 0.0 1 23 429 451 429 451 0.92

7 11 2.8e-05 0.0025 18.7 0.2 1 23 481 503 481 503 0.98

8 11 0.00057 0.049 14.6 0.2 1 23 509 531 509 531 0.97

9 11 0.0018 0.15 13.1 0.3 3 23 539 559 537 560 0.95

10 11 0.0065 0.57 11.3 0.4 1 23 573 595 573 595 0.97

11 11 0.017 1.5 9.9 0.1 1 20 758 777 758 780 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00036	0.032	15.2	0.2	2	23	137	158	136	158	0.93
2	11	0.00053	0.046	14.7	2.4	1	23	164	186	164	186	0.96
3	11	0.00013	0.011	16.7	0.6	1	23	282	304	282	304	0.98
4	11	5.3	4.6e+02	2.1	0.0	2	23	311	333	310	333	0.83
5	11	0.00022	0.019	15.9	0.0	2	23	381	403	380	403	0.90
6	11	0.0011	0.096	13.7	0.0	1	23	429	451	429	451	0.92
7	11	2.8e-05	0.0025	18.7	0.2	1	23	481	503	481	503	0.98
8	11	0.00057	0.049	14.6	0.2	1	23	509	531	509	531	0.97
9	11	0.0018	0.15	13.1	0.3	3	23	539	559	537	560	0.95
10	11	0.0065	0.57	11.3	0.4	1	23	573	595	573	595	0.97
11	11	0.017	1.5	9.9	0.1	1	20	758	777	758	780	0.93

Sequence Information

Coding Sequence: ATGGAGACGTCAGGAGTTGATTTCAACCTCCATTGGGAGGAGGTAGTGATTAAGAACTCCCCCAAACATGAGAGTGACACTATGTGCAACCTTGAAAATGTACAAAGCTATTCAGCAATGACATCTGAAGAGATGAAAGCAGATACAGACCAAATGGCAGCGGAGAATCTGATGTTTCTATCACAGGATGTGGTTGGTTATACAGAAGCAGTATTACCGGATGAATTGAATGTAGAATGTGTGACTGAAGAGGTGATAACTGATGATTGGGTTCTAGCCGGTGGACAGGAGAGaGTGGAGGTGCCAATAGAGCAATTAGTACATAATGCTTTAGATgtgaaaattgaaaatgataTTGATGTCCCATTACCAACTGATCAGGATCAGTACACGGCGATGCGGCCATGGCCGTGCGACTTCTGTTCTCGTCGGTTCCGTAAAAAGGCGGCGCTGATGAACCATATGGTGGCGCACCAGAGCGACCGTCCGCACGCCTGCAACCTGTGCGGCGTGCGGTATGTGCGCAAGTGCGATCTCATGAACCACCTCAAAGTACACGCCTTCGTGCCAGATAACCACGATACAATGGATTATGAAGATGTTATTAATAACAGTCCATTAATAAAGCCAAAGAAAAAAAGAGgacgaagaaaaaaaaatccggaACCAGAAGAGGATGGTATGTGGGAGAACATGACGTCAGCTCGCACGCAGCAGTGgcagcggcgcgcgcgcacgcCCGTGCGGCGCTCCCCCTCCCCGCCCTTCGAGCCGGacccgccccccgcgccctcGCCGCCCTCCCCGCCCTCGCCCCTGCCGCCCGCAGACCCCTCGCGCCCCTTCGTTTGCCGGCACTGCGGCGTCGGCTTCGCGAGGGAGAAGGCGCTACAGTCACATTCTAGGATCCACGGCGGCGACTCCCCGGTGGAGTGTGGCGAGTGCGGCGAGCTGTACTGGTCGCGCGAGGCGCtggccgcgcacgccgcgcacaaGCACCCGCAcgcggcgccgcgcgcgcgcagGGACCCCTCGTACGAACTCTCCAACTCGGACGAGGACTACGACTACCGCATGTCGCTGGAGggcggcgagggcgagggcggggaGCGCGCGGGCTGCGGGCGCGGGCCGGAGCTGCGCTGCCAGGACTGCGGCGTCGCCTTCCAGCGCGCCGACCTGCTGCGACGACACGTCGCCGCCGCACACAACTACAAGCGTCACGACAGCACGAGCagcgcggggggcgggggcggtgCGGGCGGCACGTGGGGGTGGGGCGAGCACGCGTGCGACGTGTGCGGGGAGACGTTCGCAGACCCGCTGCAGCTGCTCGCGCACGCGGAGGGCCACGCGGAGCGGCACCGCCCCAGCGCCACCAGATTAAAAAGAATGGGTCGCGGCAAAACTAGTGCGACATCTTCAAATAACTCGAGGCAGTTTCCATGTAGAGAGTGCgGCAAGGTGTTCGGTTCGCGCAGCTCGCAGCAGATCCACGTGCGCATCCACACGGGCGAGCGGCCCTACGCCTGCCGCTTCTGCTGGAAGGCCTTCGCTGACGGCGGCACGCTGCGCAAACACGAGCGCATACACACCGgtGAGAAGCCGTACGGGTGCGCGGTGTGCCCGCGCGCCTTCAACCAGCGCGTGGTGCTGCGGGAACACGTGCGCTCACACCACTCTGCACCCAACAGACGCACCAACGGCAACAACGTGTACACATGTGTGGTGTGCGACCGCACGCTGCACTCCAGCGTGGAGCTGGTGCAGCACCTCATACAGCACTGCGACGCCAACACCGCGCTCAAGCGGCAACCGCAGAACGGTCCTCGGAAGTACAAACGGCGGCGGAAATTGAAAACCGAACTGGTGTCGCCGAAGCGCGAGTGGGAGGATCCGGAGCGCGCGTCCTCCCCCTCTGCCGCCTCGGGCGCGTCGCGctccccgcccccgccctcgccgccgcgccgcgccccgcccccgccgcgccgcgccccgcccccgccgcgccgccgccgccgcgcgccccccgcgccgcccagACCCCGCATGATACACACCGAGGAGGCCAGGCCCAGGACTAAACAAGTGCGCGGCCGCAAATCGCCGCGGCAGCCGGCTGACGACATGCGCGCGATCGCTGTGCCCGCCTCGCCGCCCTCCCCCTCGCCGCCGTCACCCCCCTCGCCCGACATGGGCCATGCGTCCCCCGCCTCCCCCGACACGATGTCCCCGCGCTCGCCCTACTCCCCACACTCCCCGTCCGGACCGTTCAAGTGCGAGATGTGCTCGCTGGAGTTCGAGGACCGCGACGCGCTGCTGCTGCACGTGCCCGTACACATATGA
Protein Sequence: METSGVDFNLHWEEVVIKNSPKHESDTMCNLENVQSYSAMTSEEMKADTDQMAAENLMFLSQDVVGYTEAVLPDELNVECVTEEVITDDWVLAGGQERVEVPIEQLVHNALDVKIENDIDVPLPTDQDQYTAMRPWPCDFCSRRFRKKAALMNHMVAHQSDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNHDTMDYEDVINNSPLIKPKKKRGRRKKNPEPEEDGMWENMTSARTQQWQRRARTPVRRSPSPPFEPDPPPAPSPPSPPSPLPPADPSRPFVCRHCGVGFAREKALQSHSRIHGGDSPVECGECGELYWSREALAAHAAHKHPHAAPRARRDPSYELSNSDEDYDYRMSLEGGEGEGGERAGCGRGPELRCQDCGVAFQRADLLRRHVAAAHNYKRHDSTSSAGGGGGAGGTWGWGEHACDVCGETFADPLQLLAHAEGHAERHRPSATRLKRMGRGKTSATSSNNSRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYGCAVCPRAFNQRVVLREHVRSHHSAPNRRTNGNNVYTCVVCDRTLHSSVELVQHLIQHCDANTALKRQPQNGPRKYKRRRKLKTELVSPKREWEDPERASSPSAASGASRSPPPPSPPRRAPPPPRRAPPPPRRRRRAPPAPPRPRMIHTEEARPRTKQVRGRKSPRQPADDMRAIAVPASPPSPSPPSPPSPDMGHASPASPDTMSPRSPYSPHSPSGPFKCEMCSLEFEDRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01142566;
90% Identity: iTF_01149790;
80% Identity: -