Basic Information

Insect: Papilio xuthus
Gene Symbol: -
Assembly: GCA_000836235.1
Location: NW:2905258-2915769[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0059 0.34 11.2 1.1 2 23 210 232 209 232 0.92

2 23 0.2 12 6.3 0.3 1 22 626 647 626 647 0.95

3 23 4 2.3e+02 2.3 0.3 1 22 689 710 689 712 0.82

4 23 0.0038 0.22 11.8 0.6 2 21 722 741 721 742 0.94

5 23 0.4 23 5.4 0.3 2 23 750 772 749 772 0.89

6 23 0.0064 0.36 11.1 0.1 3 23 793 814 791 814 0.96

7 23 0.0011 0.064 13.4 2.5 1 23 820 843 820 843 0.95

8 23 0.074 4.2 7.7 0.0 1 23 869 892 869 892 0.90

9 23 0.0033 0.19 12.0 3.5 1 23 897 919 897 919 0.97

10 23 0.0042 0.24 11.6 0.3 1 23 925 948 925 948 0.95

11 23 0.0014 0.078 13.2 1.3 1 23 962 984 962 984 0.97

12 23 0.00011 0.006 16.7 1.8 1 23 1033 1056 1033 1056 0.97

13 23 0.0028 0.16 12.2 1.7 1 23 1119 1142 1119 1142 0.96

14 23 0.00065 0.037 14.2 2.1 2 23 1166 1188 1165 1188 0.95

15 23 0.052 2.9 8.2 0.1 2 23 1194 1216 1193 1216 0.93

16 23 0.0048 0.27 11.5 0.2 1 21 1259 1279 1259 1280 0.95

17 23 0.00025 0.014 15.5 1.0 1 23 1290 1312 1290 1312 0.93

18 23 5.2e-05 0.003 17.6 0.3 2 23 1404 1426 1404 1426 0.93

19 23 3.6e-07 2.1e-05 24.4 1.1 3 23 1433 1453 1432 1453 0.98

20 23 0.068 3.9 7.8 0.1 3 23 1473 1494 1471 1494 0.94

21 23 0.072 4.1 7.8 0.0 1 23 1514 1536 1514 1536 0.97

22 23 0.0033 0.19 12.0 0.4 1 23 1542 1565 1542 1565 0.96

23 23 0.00015 0.0086 16.2 0.4 1 23 1573 1596 1573 1596 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0059	0.34	11.2	1.1	2	23	210	232	209	232	0.92
2	23	0.2	12	6.3	0.3	1	22	626	647	626	647	0.95
3	23	4	2.3e+02	2.3	0.3	1	22	689	710	689	712	0.82
4	23	0.0038	0.22	11.8	0.6	2	21	722	741	721	742	0.94
5	23	0.4	23	5.4	0.3	2	23	750	772	749	772	0.89
6	23	0.0064	0.36	11.1	0.1	3	23	793	814	791	814	0.96
7	23	0.0011	0.064	13.4	2.5	1	23	820	843	820	843	0.95
8	23	0.074	4.2	7.7	0.0	1	23	869	892	869	892	0.90
9	23	0.0033	0.19	12.0	3.5	1	23	897	919	897	919	0.97
10	23	0.0042	0.24	11.6	0.3	1	23	925	948	925	948	0.95
11	23	0.0014	0.078	13.2	1.3	1	23	962	984	962	984	0.97
12	23	0.00011	0.006	16.7	1.8	1	23	1033	1056	1033	1056	0.97
13	23	0.0028	0.16	12.2	1.7	1	23	1119	1142	1119	1142	0.96
14	23	0.00065	0.037	14.2	2.1	2	23	1166	1188	1165	1188	0.95
15	23	0.052	2.9	8.2	0.1	2	23	1194	1216	1193	1216	0.93
16	23	0.0048	0.27	11.5	0.2	1	21	1259	1279	1259	1280	0.95
17	23	0.00025	0.014	15.5	1.0	1	23	1290	1312	1290	1312	0.93
18	23	5.2e-05	0.003	17.6	0.3	2	23	1404	1426	1404	1426	0.93
19	23	3.6e-07	2.1e-05	24.4	1.1	3	23	1433	1453	1432	1453	0.98
20	23	0.068	3.9	7.8	0.1	3	23	1473	1494	1471	1494	0.94
21	23	0.072	4.1	7.8	0.0	1	23	1514	1536	1514	1536	0.97
22	23	0.0033	0.19	12.0	0.4	1	23	1542	1565	1542	1565	0.96
23	23	0.00015	0.0086	16.2	0.4	1	23	1573	1596	1573	1596	0.96

Sequence Information

Coding Sequence: atgcGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGGCCTCGCCTCAAAAATCAGGGATTGCGTGTCTGTAGAGATAAACGAAGATGACGACCTGCCAACTAATGTTTGCAGAAAATGCTGTGACAATGTCAATAACTGGCACATTTTTAAGGATATATGTGAAAGGTCACAAAACAAACTACATACACTCATTAAAAATGATGGCAGCCAACTAGAAGAGGTGCAAATTAAAAGTGAACCTTTATCTGATGAGGCATATGATGATGGAGTGGTTATTGAAGGATCATACCCTGACCTTGAGtgtgcgtctACATCGAGCAAAGTGCAAGCAGAAGGCCCTCCTATCTTGGCTTCACTGGGTCTCACACCGAGGAGTGATAAGGGGATGGAGAGCGAAAATAACGATGAGGACGATGAAGATATGAACGAAGAAGAGATGCATGAGTCCGTTCAACAGTATCCCAGCATGCCAGCTATGCCTGAGGTCTCTATTACTGTGATGCGTCCCTCAGGAGAGACGTTGCACGCTCGGCAAGGGATCCAACAACTAGCTTCTAAAGAGTGCCTCGTGTGCGGCCGATCTTACAGATATTCACATAACGCCAGGCGACATGAACTTAATGCTCACAGTTTTGACAGATATACTAACAAAGTAACAGCCAAAAAATCACACAACACACACATGCAGCCAAAACTTAGACCCAATCCGTTCAATCCCAAAGCAAGGCTCATGCCTAATCCTATTAGTCATAAAATGCAGTTGATCCCTAAAGGGATTAATGCAAAAATCATACAGAATAAGGCTCTTGCCCCACCAAAACCGATACCGGTGAGAACACCAAAGGGAAACCAAAATAATTTGCCATACCCGCTTCGTATTAAGGCATTAAAAGACttacaaataaagaaaaaggaacCACAAATCCTAAAGACTCTCTTGACTACGAAACCCGAAATTTTGGTATCTGAACCGGAAATTCTTAATTCTGGTCCGGAAAGTCCTGAGACTTTGATATCTGAACCGGAAATAGCTTCGTTTCAGGTAGAGACTATACTTTCAGAACCGGACACTTTTATTCCtcaagatgatgatgatgtcgATGGTGAAATGCATAATAATCATAGTCATAATTACGATACCGTTGACATGGATTCTGAAAATGAGATTGAGATAGCTCgtgaaaaagaaaatgctGGTGAAGATGAAGGAGACTGTGAAGGCGATGGTGATGGTGAAAGCGGTGGTGGTGATCATCTGGTTATAAATGAAGGGGAAGAAGGTAACGAAATggataatgatgatgaaaataacatgGAAAGACATCAAAGCGACAATGAAAATGATCAAGCAGATGACAATGGCGACAGCCAGGATGGAGAAGTCGGCAACGAGAACGATGGCAGAGAAGATGAAGAGAATGGACATGAAACCAAAGAAGGCGAAGAAGGAAATGATGAACGAGACGATGATCAGATGGAGTATAAtcaagatgatgatgatgaggaaCTGCCTCCTATTGCACCCGTTGTCGAAATCAATGAAGATATGCAAACAAATTCATACAACAGTGAAGGAAATGATGAAGATCTGGACGAAACGGCCGACCCCAATGACACAGTAGAGGACGTCAAGGAACTCGATCCTGATAAACTTTACGTGACAAAGACTCAGAGAGATTTCATACTCAAATATCGCGATATAATTGAACAGATTAATACAAAAAGATGTCTTTGCTGCGATAGAGAACATCCACGCCGCAAAGCTGTCATACAACATTTGCAGAAAAATGGACACAAAGTCCCCAAACACACGTGTTACAACTGCGTTGTTACGTTTGGCCATATCGGCGCCCTGCTCAGTCACATGCGCTCCAATACTTGCACAGATCTATGGAAgattatttacaatgaaaatggAATCACCGAAGATTTAGTTCTAGAGGATGAACCTAAAGATACCAAAGTAgcatataaagatatattcaaTGCTAGGTCTTATGCTTGCAAATTATGTCCAGCTAAATtccaattaaaacaatttataatgaaacacGTGCTGGATGTGCATGAAGATGGCCAGTCTCGCGTGCAACTCGTCTGTGTTCACTGCAATTCGAGATTCAAAGATAAGGCGTTGTGGAAGAGGCACATACGCAACGGAGAATGCACCGTTTATATTTCATGCGATTTGTGTTCCGAAAGATTTGGCAACATGCAACATTTCAACGACCACGCATTAGCCGTACACGCCGGGAACTTCGACCAATCTGATAATCAGAACAAATGCGTCGATGGACGACCGACCGATTGTCCCGTTTGCGGGAAGAAGAACAGTAGCTATCCAAATTTagttaaacatttaaagattATTCACAACGAGGAGAAACCTCATTACTGCCAGCACTGCGATTCTAAATTTGAGCAAGCTGCTGATCTAAACAAGCACATCTATATGGAGCATTCTGATAGAACATTAGGCATGCAGAGCAACGAGCCCGACATGTCGCTAGTGAAGGAGGAAGCCGAGGAATACCACTACTCTTGCACAGAATGTAACGCCATATTCGAAACTGTCGACGCTTGGACGGATCATCAGGTGGCCGAACATAATCAAGTCGCTCACCACTGCGATCAATGCGACAAGAAATTCTTAAGACCGTCGGAACTCGCAGAGCACAAAAATACCCATTTGAGAGTTAAATTTTATCCTTGCAACATTTGCTCCAATTCTTACAGCACGCCCCAAAAGCTTTCGGAACACGTTCAGCAAAACCATCCTGGAGCCTCTGGGGCGTACGCGCCTGTGGACTATGACTTCTTTTGCGACATATGCATCAGGTCGTTTAAAAGTCGACAGGCCTACTCGAATCATATGCGCATACATGCCAAGGTCCCTACCACCAATAGAAAACCCGGCGAACCTAAAGGATTCGCTCCCCAAATTGTCGGCAAGCCAATTAGATCCTTCTCGATGGTACAACCTAATTATCTTTCTTTCAAACCAAATTGTAACGTTCCGAATGCGCCTTACTCCTGTGATATCTGTGGAAAAGGTTTCATgcacaagaaaaatatttggaaGCACAAGAAAGTGCTACATGCGGATACAACGGACCGAAATGATAGCGAGGAAAATACTATGCAGGCATCCACCGAAGAAGACGAATACAATTTAGACGAAAATGGTGCCGTCCTTTCGACGCCGCAATTCAAtagctttaattttactaatttagcAAACAACTTGCAACAACAGACCGTACAGACTCCACAGGAAGCCGCGCCTTATTCCTGCGAATTATGCTTCAAACGGTTTCCTCTCAGGACAAGTTTGTGGAAACACAAACGCGCCAAGCACGGAATCATCAACGCCAGCGCCAGCGGCAGCTCAGACTCACCAATAATGGCCGGAGAAGGCGGCAGATCAAGTTGCACTATTTGTAAAATCACTTTTTCAgacaaaaaatcttactatcgTCACAGAAAGAACGTTCACAAGTCTTCTTCGCAAATGTGCAAAATATGCGGAAAACCATTGAATTCCACATTAGAATTATATGAGCATCTCAAGGCTGCGCATGCCAGAGAGTTGCTTGGATATAATGCGAGTCAAGGTCCCACTAAACAAGAGGTTACCCAAGAATTGGAAGGGGAATATGACGGTGATCAGGATTCGGTCGACCCCAGTGCGGAATATCAAGCCCGCTATCCGTGTGACCAATGTGGCAAACAATTCGTCGGATTGCTCGCGTTGCAGAACCACCAATGCGTAAACCAAGTACAATCATCGCCCCAGACCTTCGACTGTGAAATATGTCACAAGAGTTACACCTCTATTTCTGCACTAAAGAGCCATCGTGGTTGGCATTTGCGTTCTCCGGATGGCAAAGCGGCCGCCAACAATTCGGGCCTGTGGATGCCTCAGCATAAAGTCACTAGCAAGGTCAGTAAACACGAGGTGGTCGATCCTTCGCAACTCGCACGCGTCTCCCACTCGACGCCGACACCCGCCAGCGTTGCCAAGAGGAGACTGCCACCGGAAGTCGAGGTCACAGTCGTAAATCCCAATAAGAAATTGCGTTCCGACGATTCTGTGGAATTAGAACAACAGAACAATTCGTCCACCGGCGCCGATGATAGGTACTGCAACATATGCGACAAAGAGTTTACCAAGCGAGCGGCCTACCAGCGGCACATGGACGAGGTACACCAGCCTAACTCCGTGTTCTGTCCCGTATGCGAGAAGAGTTTTACGCGCAAATCGACGTTGATCGTCCACATGAAGAAACACTACGGCGGCGAGGGTAGCTCCTCCGCCGCGGATCAGAACGAGGACGACAGCCTTGCGTGCGACGTTTGTGGGGCACAGTGCGATAACGAGAACGCTTTAAGAGCCCACCGCGCCATGCAACACGGTGATGATTCGGGAGAATCTGAAGATGAGGGCAGCACTGCTCCTCCCCCGGGTGAGTTTACATGCGGACAGTGCGGGGACGGCGTGGCGACGCCGCGAGACCTGATCGCGCATCGCACCATGCACGCCACGCCTACCAAGTTCTACTGCAACATCTGCAAGGTATACTTCGCGCGCGCAATCGACCTATCGTCACACACTCGCGCGCGGCACTCAGACAACGAGAAGGTGTTCTTCCCGTGTGCGATGTGTGACAGGTTCTACATGAACAAGAAGAGTTTGCAGCGGCACATTGAGATGGCTCACTGA
Protein Sequence: MRVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPGLASKIRDCVSVEINEDDDLPTNVCRKCCDNVNNWHIFKDICERSQNKLHTLIKNDGSQLEEVQIKSEPLSDEAYDDGVVIEGSYPDLECASTSSKVQAEGPPILASLGLTPRSDKGMESENNDEDDEDMNEEEMHESVQQYPSMPAMPEVSITVMRPSGETLHARQGIQQLASKECLVCGRSYRYSHNARRHELNAHSFDRYTNKVTAKKSHNTHMQPKLRPNPFNPKARLMPNPISHKMQLIPKGINAKIIQNKALAPPKPIPVRTPKGNQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEILVSEPEILNSGPESPETLISEPEIASFQVETILSEPDTFIPQDDDDVDGEMHNNHSHNYDTVDMDSENEIEIAREKENAGEDEGDCEGDGDGESGGGDHLVINEGEEGNEMDNDDENNMERHQSDNENDQADDNGDSQDGEVGNENDGREDEENGHETKEGEEGNDERDDDQMEYNQDDDDEELPPIAPVVEINEDMQTNSYNSEGNDEDLDETADPNDTVEDVKELDPDKLYVTKTQRDFILKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITEDLVLEDEPKDTKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKALWKRHIRNGECTVYISCDLCSERFGNMQHFNDHALAVHAGNFDQSDNQNKCVDGRPTDCPVCGKKNSSYPNLVKHLKIIHNEEKPHYCQHCDSKFEQAADLNKHIYMEHSDRTLGMQSNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQNHPGASGAYAPVDYDFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIVGKPIRSFSMVQPNYLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADTTDRNDSEENTMQASTEEDEYNLDENGAVLSTPQFNSFNFTNLANNLQQQTVQTPQEAAPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGSSDSPIMAGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSSQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQGPTKQEVTQELEGEYDGDQDSVDPSAEYQARYPCDQCGKQFVGLLALQNHQCVNQVQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVSHSTPTPASVAKRRLPPEVEVTVVNPNKKLRSDDSVELEQQNNSSTGADDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLIVHMKKHYGGEGSSSAADQNEDDSLACDVCGAQCDNENALRAHRAMQHGDDSGESEDEGSTAPPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFYCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01141080;
90% Identity: iTF_01140354;
80% Identity: -