Ppol005535.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio polyxenes
Gene Symbol
-
Assembly
GCA_026167825.1
Location
JAOPJD010000023.1:1573269-1579310[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00018 0.015 16.2 0.3 1 23 205 227 205 227 0.97
2 28 0.00046 0.04 14.8 0.7 2 22 259 279 258 279 0.93
3 28 9.7e-06 0.00086 20.1 0.3 2 23 309 331 308 331 0.96
4 28 0.0018 0.16 12.9 1.7 1 23 382 405 382 405 0.97
5 28 0.015 1.4 10.0 0.1 1 23 424 446 424 446 0.96
6 28 0.00038 0.034 15.1 1.8 2 23 485 506 484 506 0.97
7 28 0.00025 0.022 15.7 1.6 2 23 545 567 545 567 0.97
8 28 6.1e-05 0.0054 17.6 1.5 1 23 617 640 617 640 0.97
9 28 0.00071 0.062 14.3 0.2 1 23 696 718 696 718 0.98
10 28 0.0067 0.59 11.2 6.1 2 23 730 751 729 751 0.97
11 28 0.075 6.6 7.9 2.3 2 23 763 784 762 784 0.96
12 28 0.0055 0.49 11.4 1.1 1 23 794 816 794 816 0.98
13 28 0.0019 0.17 12.9 3.6 1 23 842 864 842 864 0.96
14 28 6.6e-06 0.00058 20.6 1.1 1 23 875 897 875 897 0.98
15 28 0.0033 0.29 12.2 1.2 1 23 905 927 905 927 0.95
16 28 0.00026 0.023 15.6 0.3 2 23 947 969 946 969 0.97
17 28 1.1 98 4.2 1.0 1 23 987 1009 987 1009 0.91
18 28 0.84 75 4.6 4.2 1 23 1016 1038 1016 1038 0.96
19 28 0.0087 0.77 10.8 2.8 2 23 1049 1071 1048 1071 0.95
20 28 0.0011 0.099 13.6 0.3 1 23 1093 1115 1093 1115 0.97
21 28 6.9 6.1e+02 1.7 5.9 2 23 1158 1180 1157 1180 0.94
22 28 0.0047 0.42 11.7 0.9 1 23 1195 1217 1195 1217 0.94
23 28 0.06 5.3 8.2 5.2 3 23 1225 1245 1223 1245 0.96
24 28 0.0063 0.56 11.3 1.0 2 23 1256 1278 1255 1278 0.95
25 28 3 2.6e+02 2.8 5.4 2 23 1295 1313 1295 1313 0.88
26 28 1.5 1.3e+02 3.8 1.3 2 21 1317 1336 1317 1337 0.92
27 28 0.19 17 6.6 0.4 2 23 1386 1407 1385 1407 0.93
28 28 0.00043 0.038 14.9 0.2 2 23 1418 1440 1417 1440 0.95

Sequence Information

Coding Sequence
ATGGCCCTCAAGCTTGGAAAATGTAGGCTCTGCCTCAAACTCGGCGACTTTTATTCCATCTTCACGATGGATAACAACTTGCAGCTCGCGGAGATGGTTATGGAATGTGCTCGTGTAAAGATATATGAAGGAGATGGACTGCCAGACAAGATATGCTCAGAGTGTATTCAGAAGCTTAGCAGTGCACACATATTCAAGCAGCAGTGTGAAAGATCGGATCAGGAGTTGCGACGGAATTATGTGCCTCCACCTGGTTACAGCGGTTACAGCGGTGTACCTTCACCTACAAACAGGCAGAGCAGCGACTCAGCATTCTCTAACAACACAGATGTGTCTGTTAAGACTCAGGCCACAACATCGCCGACGGAAACAAAAGTCTCTCCTGCAAGTCGGAGCAGAAAACGTAGTGCGGAAAGTATTGACAATACATCATCCAGCGGACAATCCTATGACTACCGACCCACCTCTACCAAACGAGTGGCAGAACTTCGGGCTGCAGAAAAAAGGCCAAGAAGAACCCTTAACTCTTCTAATGCAGACTCTGATTATGAAGACAATAGTGGTTCCCAATGCTCTGTTGAAACTGATTCTGATGAACCATCAAAGAGTGAATTCAAATGTAAAGTTTGTGGCAAAGAATTTGCCTCACAAAAAGGTGTGTCCGCCCATTCCAAAGTTCATTTAAGGAAAAGTTACAAGAATGTTATAGTCAACATACCACAACCTGTTGAGAATAATGAAGTGGAGAATGCCAATGATATTGAGGATAAGATGGAATGTGAGAAATGTGACAAGAAATTTAAGTTGAAAATAATGTTGAAACGTCACCAAGAAACATGCGGAAAGATATTACCAAAGTCACCAATTAAAGAGTTGCAAGTTTCACTGGAGCCAATTGACTCTGTTTCCTCGCAAAACAAAATTGAATGTGAAATGTGCTCGACCAAATTTAAAACTATAGATAATTTGGAGAAACATATGAGAGTAGTGCATGCGGCTGTTCTAAAACGCGATAAATATGAGCAAATAGTCGAAAACGGTGCAAACATCGCCCCTTGTTATTTTTGCGCGCAGCCATTCGAGGATTATAATGTTTACATTGAACACTTTGATAATTGTTCAAAGAAGCGCGATGTTATTATTTTCACATGTCCACTCTGCCGCAAAGTTTTGTCTAAAAAGAGCACTTATTTCCTTCATATAAAAAATATGCATTTGTCTGTTTGTGGGGAACAAAACAAGAGTGTCGATAAATCTATGGAAGGTTCATTTGAATGTCGCATATGTAGCAAGAAGATGGTGTCTCAAGACCAGCTCATAAGTCATCTGGCAGGGCATATGTCCAACATGGGTGATGATGAAATGGCTGAAGTCAATACATGTGAAAGTCCTACAGACAATGAAGCAGATTTAGCAAACTACTCAAATCCTCATGTGTCTTCTGGACCACTGAAGTGTAGCATGTGTGAGAAACGATTCACCTATAAGAAAGCTCTGGTCACTCATGAACAGAAGCACTTGGATGGAGAGTTAGAGATAAAACAAGAGCCAGAGGAGAAGGACAGCAGTTTGCTGAGTGAGTCCTACCGTGAGTCCGAGTCGGAATCTAGTCAAGAAGACGATGACGACAATACATGCGATATTTGTGAGAAGGAATTTTCTTACAAACGTCTGTTAATTCAGCACAAGAAGACCAAACATAACATGAGCTCCGGCACGAAGAGAGCCAAAATCAGCCTCAAAGACTGCAGTGTGAGGTGTCTCATCTGTGACATAGAAATGAAAGTGAGTGCAATAAACGAGCACAATCAGAAACACACAACTATTAACATAAAGCCTCGTAATCTGTATACGTGTGCGGAATGCAATGAGAAGTTTAAGAGCTGCAGCTCATTGGCTACACACATCAAGTTGGTGCACCGGCTGAAGCAGCCGCAAACGCCCAAGTTGCAGCGCGCGGAGTTGGCGGATTTTTGTGAGGTCGTCGTGACCAAGACGGAACCTCTGGCTTCGGGCCAGGATCGCGACGACCTTGTGACGGTTCCGCCTGTTCCCGAGTCTGCACCACTAGTCAATCTGTCCAGCTTCACCTGCCCCACCTGTGGCAAGCAGATGCCCACCTTGATATCACTGAAGAGGCACATCAACTGGCATTCTAATGTCGGCAACAACATTGAAAAGAAGCTAGAATGTTTTGTCTGTAAAGAGGTATTCCGTTTCCAGTGTCACTACCGGCTGCACATGCGAAAACACTACAACGACACAAACCTGGACCCCGCGCTTCTCACCTGCACCATCTGCAACCGCAAGAGCAAGCACCTCCGCGCCGCGAAGGCACATATGAATTTCCACAAACAGACGCGTTTCAAGAATAAGGACTACCAGTGCTCCATATGCAAGAGAGTCTTTCAGTTCCGAAAGGTGTACCTTTCTCACATGGCGATACACTACAAGCGCGGCGAGAGCGCCAACAACACGGTGGTCGGCATCGAGTCGGCCGTCGCCCGCGTGCCCGCCGCAGCACACACCTGCCAATATTGCGGGAAAGTTTGCGACTCAGAAGTCTCGCTCAAGCATCATGTCATATGGCACAAGTCGAAGACCTCGCTCTTCGGCGCCCGTCATGAATGCAACATCTGCGGCATTATGTTCACCAACAAGAGAACATTGGAGCTGCATGTCCGCTCTCATTACGAGGACGACAATGGCCCTTACAAATGTACAATATGCGGGAAAGGATTCATCGACGAAGTCTATCACAGAAAACACGTGAAGGGGCACAACTTTGACCACCAATCGCACCAGGCCAGGATAGCGAAGCTCAGAAAGGACAAGGTAAAGTGCCCGATTTGTAGCCGATTCTATCCCGATCTCGTTAAACTCATCCGTCATCTGCGGCGGACGCATCCTGAGAGCAAAATGATAAAGAACGATCCGGATGCGCCGCAGCAGAGTTACTTTTCATGTAAACTGTGCGCCAAAGTATTCCTCGACGAGCGCAGGCTGCAACACCATGAGGAGGCCCACTTGAGGAAGCCGGAGTTCTTTAAATGCAAATTCTGCGGCAAGAAGACCATGTCGTTGAAGGGTCATCGCGTGCACATTAAATCTCACTTGACACAAAAATATATTGATGAGCCTCTCAAGTGCATGCATTGCGAGGAAACCTTCACGCGGGGATACGATCTGCATTATCACCTGCGCGACGTCCACGACATCAACGAGACGTGGATAGCGGAGCGCACCGAGATAACGCTGAATGGACCTCTCAAAGAGTTCCAGTGCTCCATCTGCCTAAAGATACTCGCGAGCAAAGGCAACTTCGAGCGACACATTGATTACCACAATTCACTGAGGTGCAACTACTGCTTCGACTACTTCAGTTCGCTCAGATTCTTGGAGGGCCATCTCACCTTCAGCTGCGACAAAAAGAAACTCGTCGGCGACACGGAGGTGTATCCCCGGAAAGTGAAGTGCCATATCTGTTACAAAGCATTTCATCTTCAAGTTAAATTAGATTGTCATCTGAGAACTCAGCACAATATTAAAGTTTGTAAAGAGGTGTCTGAAGGTAAAAAGGACTTTGTCTGCGATTATTGCTTTAAAGTGTTCGAGAATGAGTTCGCCCTGAGTACTCACAAAGTCTATCATCGCACCGTCGGCTTCTACGGCTGCCTGTACTGCAACCGAAAGTTCAACACACTGACGCTGTTCAAAAAGCATAAAAACCATCATTTTTCACAGCTGAATGTCGACAACCCGACCAAGTGCGAGCACTGCGATGAGACTTTTGTCGCATTTAGAGAGTTTATATATCACATGAGAGATGTCCACGGGGACGATAAGGAATGGACGGTATTGCCCAAAGAGTCGATAGAGGAAAAGTGCCATATTTGCAACAAAATATTCTTTAATCTCCACAAACATTTGGCATACCATGAAGAGAATAGATGTAAAAAATGCTCAGAGTATTTTTACTCCCAGATTGAGTACGACAATCACCTGTGCGCAATAGAGAGTGAAGAAGAGGTCGATGAGAAGAACGAAAGTGATCTAAGACCGAAATACGAGGAGTGTGCGTTTTGCTTCAAGCCCACGACGAAGAAGAACTCGCAGCGGCTGCACGACCATATCCACAAGGTGTCCGGCTCCATCTCGTGCCGCTTCTGCCCTCTCAAGTTTAAAACTATTGACGCGTTCAACATCCACGCGTTCTCCCACCGCAGCAGAAAGTACGACAAGAAGCCGATAAAGTGTCGGCAGTGCGGGGAGAAATTCGTGCGCTACGGACCCTTCATAAGGCACATGAGGGCGGTGCACAAGTCGAAGCAGAAACTGCACTACCGCGCGATGGTGCGCCCGGAGCCGTGCGTCGTCTGCGGGGATCTCTTCCCCAACTTGCACAACCACTACCGCGCGCATCTCCAGAACCAGTGCCAGCAGTGCCGCAAATACTTTACTTCTTGCAAAGTGTTCTCACAACACGAATGCGACAAAGAGGATTCTAACCCATCGAAAGTGTTCACCTGCGACGAGAACCTCGTGGCTCTCATCAATTCGTACACGCCCAAGGACGAGAAAGACGACGAGAAATTCTACGGGCACAGTGATGATGAGGACGAGATTGCCGTGGAGCCGAATGTACCTGACAATGACTACATGACACAGGATGAGGAGAGTCAAAATTCCACAGATATGAGTATTCATCAAATGGTCCATGCGCCCATTATATCAGATGTTCTATCGCTTTACAAGCAAAAGGAAGAAGAGACTCTAAATAATGTGGTCGACTTGGTGGATGATAACAGCCTAGACGGTGAAGATATTGTTAACATCATTACTATAGATGACTGA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTMDNNLQLAEMVMECARVKIYEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGYSGYSGVPSPTNRQSSDSAFSNNTDVSVKTQATTSPTETKVSPASRSRKRSAESIDNTSSSGQSYDYRPTSTKRVAELRAAEKRPRRTLNSSNADSDYEDNSGSQCSVETDSDEPSKSEFKCKVCGKEFASQKGVSAHSKVHLRKSYKNVIVNIPQPVENNEVENANDIEDKMECEKCDKKFKLKIMLKRHQETCGKILPKSPIKELQVSLEPIDSVSSQNKIECEMCSTKFKTIDNLEKHMRVVHAAVLKRDKYEQIVENGANIAPCYFCAQPFEDYNVYIEHFDNCSKKRDVIIFTCPLCRKVLSKKSTYFLHIKNMHLSVCGEQNKSVDKSMEGSFECRICSKKMVSQDQLISHLAGHMSNMGDDEMAEVNTCESPTDNEADLANYSNPHVSSGPLKCSMCEKRFTYKKALVTHEQKHLDGELEIKQEPEEKDSSLLSESYRESESESSQEDDDDNTCDICEKEFSYKRLLIQHKKTKHNMSSGTKRAKISLKDCSVRCLICDIEMKVSAINEHNQKHTTINIKPRNLYTCAECNEKFKSCSSLATHIKLVHRLKQPQTPKLQRAELADFCEVVVTKTEPLASGQDRDDLVTVPPVPESAPLVNLSSFTCPTCGKQMPTLISLKRHINWHSNVGNNIEKKLECFVCKEVFRFQCHYRLHMRKHYNDTNLDPALLTCTICNRKSKHLRAAKAHMNFHKQTRFKNKDYQCSICKRVFQFRKVYLSHMAIHYKRGESANNTVVGIESAVARVPAAAHTCQYCGKVCDSEVSLKHHVIWHKSKTSLFGARHECNICGIMFTNKRTLELHVRSHYEDDNGPYKCTICGKGFIDEVYHRKHVKGHNFDHQSHQARIAKLRKDKVKCPICSRFYPDLVKLIRHLRRTHPESKMIKNDPDAPQQSYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTMSLKGHRVHIKSHLTQKYIDEPLKCMHCEETFTRGYDLHYHLRDVHDINETWIAERTEITLNGPLKEFQCSICLKILASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLTFSCDKKKLVGDTEVYPRKVKCHICYKAFHLQVKLDCHLRTQHNIKVCKEVSEGKKDFVCDYCFKVFENEFALSTHKVYHRTVGFYGCLYCNRKFNTLTLFKKHKNHHFSQLNVDNPTKCEHCDETFVAFREFIYHMRDVHGDDKEWTVLPKESIEEKCHICNKIFFNLHKHLAYHEENRCKKCSEYFYSQIEYDNHLCAIESEEEVDEKNESDLRPKYEECAFCFKPTTKKNSQRLHDHIHKVSGSISCRFCPLKFKTIDAFNIHAFSHRSRKYDKKPIKCRQCGEKFVRYGPFIRHMRAVHKSKQKLHYRAMVRPEPCVVCGDLFPNLHNHYRAHLQNQCQQCRKYFTSCKVFSQHECDKEDSNPSKVFTCDENLVALINSYTPKDEKDDEKFYGHSDDEDEIAVEPNVPDNDYMTQDEESQNSTDMSIHQMVHAPIISDVLSLYKQKEEETLNNVVDLVDDNSLDGEDIVNIITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01146664;
90% Identity
iTF_01144710; iTF_01139105; iTF_01149766;
80% Identity
-