Basic Information

Insect: Papilio xuthus
Gene Symbol: -
Assembly: GCA_000836235.1
Location: NW:1654975-1663183[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 6.9e-05 0.0039 17.3 0.5 1 23 202 224 202 224 0.98

2 29 0.00053 0.03 14.5 0.7 2 22 255 275 254 275 0.93

3 29 0.00015 0.0084 16.2 0.2 2 23 305 327 304 327 0.96

4 29 0.00097 0.055 13.6 0.9 1 23 378 401 378 401 0.97

5 29 0.069 3.9 7.8 0.2 1 23 420 442 420 442 0.95

6 29 0.00033 0.019 15.1 1.8 2 23 481 502 480 502 0.97

7 29 0.00034 0.02 15.1 2.1 2 23 541 563 541 563 0.97

8 29 5.4e-05 0.0031 17.6 1.5 1 23 613 636 613 636 0.97

9 29 0.00035 0.02 15.1 0.2 1 23 692 714 692 714 0.98

10 29 0.0065 0.37 11.1 4.5 2 23 726 747 725 747 0.97

11 29 0.057 3.3 8.1 1.9 2 23 759 780 758 780 0.96

12 29 0.0048 0.28 11.4 1.1 1 23 790 812 790 812 0.98

13 29 0.0054 0.31 11.3 5.4 1 23 838 860 838 860 0.96

14 29 5.8e-06 0.00033 20.6 1.1 1 23 871 893 871 893 0.98

15 29 0.0029 0.16 12.2 1.2 1 23 901 923 901 923 0.95

16 29 0.00019 0.011 15.9 0.2 2 23 943 965 942 965 0.97

17 29 0.98 56 4.2 1.0 1 23 983 1005 983 1005 0.91

18 29 0.47 27 5.2 2.9 1 23 1012 1034 1012 1034 0.95

19 29 0.0015 0.084 13.1 2.8 2 23 1045 1067 1044 1067 0.95

20 29 0.00098 0.056 13.6 0.3 1 23 1089 1111 1089 1111 0.97

21 29 6 3.4e+02 1.7 5.9 2 23 1154 1176 1153 1176 0.94

22 29 0.00063 0.036 14.2 0.8 1 23 1191 1213 1191 1213 0.96

23 29 0.053 3 8.2 5.2 3 23 1221 1241 1219 1241 0.96

24 29 0.012 0.71 10.2 1.1 2 23 1252 1274 1251 1274 0.94

25 29 2.6 1.5e+02 2.8 5.4 2 23 1291 1309 1291 1309 0.88

26 29 1.3 73 3.8 1.3 2 21 1313 1332 1313 1333 0.92

27 29 0.32 18 5.7 1.9 2 23 1384 1405 1383 1405 0.93

28 29 0.00038 0.021 14.9 0.2 2 23 1416 1438 1415 1438 0.95

29 29 1.5 84 3.6 3.2 2 21 1476 1495 1475 1496 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	6.9e-05	0.0039	17.3	0.5	1	23	202	224	202	224	0.98
2	29	0.00053	0.03	14.5	0.7	2	22	255	275	254	275	0.93
3	29	0.00015	0.0084	16.2	0.2	2	23	305	327	304	327	0.96
4	29	0.00097	0.055	13.6	0.9	1	23	378	401	378	401	0.97
5	29	0.069	3.9	7.8	0.2	1	23	420	442	420	442	0.95
6	29	0.00033	0.019	15.1	1.8	2	23	481	502	480	502	0.97
7	29	0.00034	0.02	15.1	2.1	2	23	541	563	541	563	0.97
8	29	5.4e-05	0.0031	17.6	1.5	1	23	613	636	613	636	0.97
9	29	0.00035	0.02	15.1	0.2	1	23	692	714	692	714	0.98
10	29	0.0065	0.37	11.1	4.5	2	23	726	747	725	747	0.97
11	29	0.057	3.3	8.1	1.9	2	23	759	780	758	780	0.96
12	29	0.0048	0.28	11.4	1.1	1	23	790	812	790	812	0.98
13	29	0.0054	0.31	11.3	5.4	1	23	838	860	838	860	0.96
14	29	5.8e-06	0.00033	20.6	1.1	1	23	871	893	871	893	0.98
15	29	0.0029	0.16	12.2	1.2	1	23	901	923	901	923	0.95
16	29	0.00019	0.011	15.9	0.2	2	23	943	965	942	965	0.97
17	29	0.98	56	4.2	1.0	1	23	983	1005	983	1005	0.91
18	29	0.47	27	5.2	2.9	1	23	1012	1034	1012	1034	0.95
19	29	0.0015	0.084	13.1	2.8	2	23	1045	1067	1044	1067	0.95
20	29	0.00098	0.056	13.6	0.3	1	23	1089	1111	1089	1111	0.97
21	29	6	3.4e+02	1.7	5.9	2	23	1154	1176	1153	1176	0.94
22	29	0.00063	0.036	14.2	0.8	1	23	1191	1213	1191	1213	0.96
23	29	0.053	3	8.2	5.2	3	23	1221	1241	1219	1241	0.96
24	29	0.012	0.71	10.2	1.1	2	23	1252	1274	1251	1274	0.94
25	29	2.6	1.5e+02	2.8	5.4	2	23	1291	1309	1291	1309	0.88
26	29	1.3	73	3.8	1.3	2	21	1313	1332	1313	1333	0.92
27	29	0.32	18	5.7	1.9	2	23	1384	1405	1383	1405	0.93
28	29	0.00038	0.021	14.9	0.2	2	23	1416	1438	1415	1438	0.95
29	29	1.5	84	3.6	3.2	2	21	1476	1495	1475	1496	0.92

Sequence Information

Coding Sequence: ATGGCCCTCAAGCTTGGAAAATGTAGGCTCTGCCTCAAACTCGGTGACTTTTATTCCATCTTTACGATGGATAACAACCTACAGCTCGCGGAGATGGTTATGGAATGCGCTCGAGTAAAGatatatgaaGGAGATGGACTACCAGACATGATATGTTCAGAGTGTATTCAGAAGCTTAGCAGTGCACACATATTCAAGCTGCAGTGTGAAAGATCGGATCAGGAGTTGCGACGGAATTATGTTCCTCCACCTGGTTTCAGTGCTGTACCTTCACCCTCAAACCGGCAGAGCAGTGACTCTGCATTCTCCAACAACACCGATGTGTCTATTAAGACTCAGGCTACAACATCACCGATAGAAACAAAAGTCTCTCCTGCCAGCCGGAGCAGAAAACGCAGTGCAGAAAGTGTTGACAATACGTCATCCAGTGGACAATCCTATGACTACCGACCCACCTCAACCAAACGAGTGACAGAACTTCGGGCCACAGATAAAAGGCCAAAAAGAACTCTTAACTCTTCTTATGCAAACTCCGACTATGAAGACAATAGTGCATCCCAATGTTCCGTCGAAACTGACTCCGATGAACCATCAAAAAACGAATTCAAATGCAAAGTATGTGGCAAAGAATTCGCCTCACAAAAGTCTGTGTCTGCTCATTCCAAAGTTCATTTAAGGAAAGGTTACAAGAATGTTATAGTAAATATACCGCAACCAGTTGAGAACAAAGTGGAGAATGCAAATGATATTGAAGATAGGATAGAGTGTGAGAAATGtaacaagaaatttaaattgaaaataatgttaaaacgCCACCAAGAGACATGCGGAAAAATACTATCGAAGTCACTAATTAAAGAGTTGCAAGTTTCTCTGGAGCCAATTGATGCTGACTCCCCGCAAAATAAGATTGAATGTGAAATGTGCTCaagcaaatttaaaagtattgagAACCTGGAGAAACATATGAGAGTAGTACATGCGGCTGTTTTAAAACGCGATAAATATGACGAAATAGTTGAAAACGGTGCAAACGGAGTACCTTGTTACTTTTGCTCGCAACCATTCGACGACTATAATGTTTACATTGAACACTTTGATACATGTTCAGAGAAGCGcgatgttattattttcactTGTCCAATCTGTCGCAAAGTTTTGTCTAAAGAGAGCACTTTTTTccttcatataaaaaatatgcatttgtCTGTTAGCGGGGAACAAAGCAAAAGTGAGGAAAAATCTATAGAAGGATCATTTGAATGTCGCATATGTAGCAAGAAGATGGGGACCCAGAACCAGCTCATAAGTCATCTGGCAGGGCATATGTCCAACATGGGTGAAGAGGAAATGGCTGAAGTCAATACATGtcaAAGTCCTATAGACGATGAATCAGATTTAACAAACTACACAAATACTCATGTATCTTCTGGACCTCTGAAGTGTAGCATGTGTGAGAAACGATTCACCTACAAGAAAGCCCTGGTCACACACGAGCAGAAGCACTTGGATGgagaattagaaataaaacaagaatcAGAGGAGAAGGACACCAGTTTGTTGAGCGAGTCCTATCGTCAGTCCGAGTCAGAATCTAGTCAAGAAGAGGATGACGACAATACATGCGATATTTGTGAGAagcaattttcttacaaacgTCTCTTGATTCAGCACAAGAAGACCAAACACAACATGAGCTCAGGCACAAAGCGAGCCAAGATCACCCTCAAAGACTGCAGTGTGAAGTGTCTTATCTGTGACATAGAAATGAAAGTTAGCGCAATCAATGAGCACAACCAGAAACACACAACTGTTAACATAAAGCCTCGTAACTTGTACACATGTGCGGAATGCAACGAAAAGTTTAAGAGCTGCAGCTCACTGGCTACTCACATTAAGTTGGTGCACCGGCTGAAGCAACCGCAAGCACCCAAGCTGCAGCGCGCCGAGTTGGCGGATTTTTGTGAGGTCGTCGTGACCAAGACGGAACCTCTGGCAACGGGCCAGGGCCGCGACGACCTTGTGACGGTTCCGTCTACTGACGAGTCCTCGCCACTAGTCAATCTGTCCGGCTTCACATGCCCCACATGCGGCAAGCAGATGCCCACCTTGGTATCACTAAAGAGGCACATCAACTGGCATTCTAATGTCGGTAACAACATTGAAAAGAAGGTGGAGTGTTTCGTCTGTAAAGAGGTATTCCGGTTCCAGTGCCACTACCGGCTGCATATGCGAGAACACTACAAGGACACGAACCTGGACCCAGCGCTGCTTACCTGCACCATCTGCAACCGCAAGAGCAAGCACCTCCGCGCCGCGCAGGCACACATGAATTTCCACAAACAGACGCGCTTCAAGAACAAAGACTACCAGTGCTCCATCTGCAAGAGAGTCTTTCAGTTCCGGAAGGTATATCTTTCTCACATGGCGATACACTACAAGCGCGGTGAGAGCGCCAACAACACAGTGGTCGGTGTCGAGCTGGCAGCCGGCCGCGTGGCCGTCGCCGCGCACACTTGCCAACATTGCGGCAAGGTGTGCGACTCCGAAGTCTCCCTCAAGCACCATGTGATATGGCACAAGTCGAAGACCTCGCTCTTCGGCGCCCGCCATGAGTGCAACATTTGCGGCATTATGTTCACCAATAAGAGAACGCTGGAGCTGCACGTCCGATCTCATTACGAGGACGATAATGGCCCTTACAAATGTACGATATGCGGGAAAGGATTCATCGACGAAGTATATCACAGGAAACACGTGAAGGGGCACAACTTTGACCATCAATCGCACCAGGCGAGGATAGCAAAGCTCAGGAAGGACAAAGTAAAGTGCCCAATCTGTAACCGATACTATCCCGATCTCGTGAAACTCATTCGCCATCTGCGGCGGACGCATCCTGAGAGCAAAATGATAAAGGAGGATCCGGACGCGCCTCAGCAGAGCTACTTCTCGTGTAAACTGTGCGCCAAAGTATTCCTAGACGAGCGCAGGCTGCAACACCACGAGGAGGCTCACTTGAGGAAGCCGGAGTTCTTTATATGCAAGTTCTGCGGCAAGAAGACCATGTCGCTGAAAAATCACCGGGTACACATTAAAGCTCACttgtcacaaaaatatttagaagagCCCCTCAAGTGCACGCATTGCGAGGAATCTTTCACGCGAGGCTACGACCTGCACTACCACTTGCGCGACGCGCACGACATCAACGAGACTTGGATAGCGGAGCGCACCGAGAAGACGCTCAATGGACCTCTCAAAGAGTTCCAGTGCTCCATCTGCCTTAAGATACTCGCGAGCAAAGGCAACTTCGAGCGGCACATCGATTACCACAACTCACTGAGGTGCAACTACTGCTTCGACTATTTCAGCTCCCTCAGGTTCTTGGAGGGGCATCTCGCCTTCAGCTGCGACAAGAAGAAACTCGTCGGCGACACGGAGGTGCACCCCCGGAAAGTGAAGTGCCATATATGTTACAAAGCATTTCATCTTCAAGTTAAATTGGACTGTCATCTCAGGACTCAGCacaatattaaagtttgtaaaGAAGTGACTGAAGGTAAAAAGGATTTTGTTTGCGATTATTGCTTTAAAGTATTCGAGAATGAGTATGCCTTGAGTACTCATAAGATCTATCATCGCACCGTTGGCTTCTACGGCTGCCTGTACTGCAACCGCAAGTTTAACACACTGACGCTGTTCAAGAAACATAAGAACCACCATCTTGCGCAACTAAACGTCGACAACCCGACAAAGTGCGAGCATTGCGACGAGACTTTTGTCGCATTTAGAGAGTTTATATACCACATGAAGGACGTCCATGGGGACGATAAGGAATGGACCGTAATGCCCAAGGAGTCGATAGAAGAAAAGTGCCATATTTGCAACAAAATATTCTTCAACCTCCACAAACATTTGGCATACCATGAAGAGAATAGATGTAAAAAATGCTCAGAGTATTTCTACTCTCAGATCGAGTATGACAATCACCTGTGTGCGATCGACAGCGAAGAAGAGGTCGACGATAAGCACGAGAGCGATCTCACACTCACACCTAAATACGAGGAGTGCGCGTTTTGCTTCAAGCCCACAACGAAGAAGAACTCACAGCGACTGCACGACCACATCCACAAGGTGTCCGGCTCCATCTCGTGCCGCTTCTGCCATCTCAAGTTTAAAACTATCGACGCGTTCAACATTCACGCGTTCTCCCACCGCAGCAGGAAGTACAACAAGAAGCCGATAAAATGTCGGCAGTGCGGCGAGAAGTTCGTGCGCTACGGGCCCTTCATACGGCACATGAGGGCGGGCCACAAATCGAAGCAGAAGTTGCACTACCGCGCCATGGTGCGCCCGGAGCCATGCGTAGTCTGCGGCGACCTCTTCCCCAATTTGCACAAACACTACCGCGCTCATCTCCAGAACCAGTGCCAGCAGTGCCGCAAATATTTCACCTCGTCCAAGGTGTTCTCACTGCACCAATGCGACAAAGAGGATTCCGACCCATCGAAAGTGTTCACCTGTGATGAGAACCTCGTGGCTCTCATTAATTCTTACACGCCCAAGGACGAAAAAGACGACGAGAAATTCTACGGGCACAGCGACGATGAAGACGAGGGGGCTGTGGAGCCGAATTTGATTGAACACAATGATTACATGACACAGGATGAGGAGAGTCAAAATTCCACGGATATGAATATTCACCAAATGGTCCACGCGCCCATTATATCAGAAGTTCTGTCGCTTTACCAGCAAAAGGAAGAAGAGATGCCAAACAATGTTGTCGACTTGGTGGACGACAACAGCCTCGATGGTGAAGATGTTGTAAACATCATAACAATAGATGACTGA
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTMDNNLQLAEMVMECARVKIYEGDGLPDMICSECIQKLSSAHIFKLQCERSDQELRRNYVPPPGFSAVPSPSNRQSSDSAFSNNTDVSIKTQATTSPIETKVSPASRSRKRSAESVDNTSSSGQSYDYRPTSTKRVTELRATDKRPKRTLNSSYANSDYEDNSASQCSVETDSDEPSKNEFKCKVCGKEFASQKSVSAHSKVHLRKGYKNVIVNIPQPVENKVENANDIEDRIECEKCNKKFKLKIMLKRHQETCGKILSKSLIKELQVSLEPIDADSPQNKIECEMCSSKFKSIENLEKHMRVVHAAVLKRDKYDEIVENGANGVPCYFCSQPFDDYNVYIEHFDTCSEKRDVIIFTCPICRKVLSKESTFFLHIKNMHLSVSGEQSKSEEKSIEGSFECRICSKKMGTQNQLISHLAGHMSNMGEEEMAEVNTCQSPIDDESDLTNYTNTHVSSGPLKCSMCEKRFTYKKALVTHEQKHLDGELEIKQESEEKDTSLLSESYRQSESESSQEEDDDNTCDICEKQFSYKRLLIQHKKTKHNMSSGTKRAKITLKDCSVKCLICDIEMKVSAINEHNQKHTTVNIKPRNLYTCAECNEKFKSCSSLATHIKLVHRLKQPQAPKLQRAELADFCEVVVTKTEPLATGQGRDDLVTVPSTDESSPLVNLSGFTCPTCGKQMPTLVSLKRHINWHSNVGNNIEKKVECFVCKEVFRFQCHYRLHMREHYKDTNLDPALLTCTICNRKSKHLRAAQAHMNFHKQTRFKNKDYQCSICKRVFQFRKVYLSHMAIHYKRGESANNTVVGVELAAGRVAVAAHTCQHCGKVCDSEVSLKHHVIWHKSKTSLFGARHECNICGIMFTNKRTLELHVRSHYEDDNGPYKCTICGKGFIDEVYHRKHVKGHNFDHQSHQARIAKLRKDKVKCPICNRYYPDLVKLIRHLRRTHPESKMIKEDPDAPQQSYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFICKFCGKKTMSLKNHRVHIKAHLSQKYLEEPLKCTHCEESFTRGYDLHYHLRDAHDINETWIAERTEKTLNGPLKEFQCSICLKILASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLVGDTEVHPRKVKCHICYKAFHLQVKLDCHLRTQHNIKVCKEVTEGKKDFVCDYCFKVFENEYALSTHKIYHRTVGFYGCLYCNRKFNTLTLFKKHKNHHLAQLNVDNPTKCEHCDETFVAFREFIYHMKDVHGDDKEWTVMPKESIEEKCHICNKIFFNLHKHLAYHEENRCKKCSEYFYSQIEYDNHLCAIDSEEEVDDKHESDLTLTPKYEECAFCFKPTTKKNSQRLHDHIHKVSGSISCRFCHLKFKTIDAFNIHAFSHRSRKYNKKPIKCRQCGEKFVRYGPFIRHMRAGHKSKQKLHYRAMVRPEPCVVCGDLFPNLHKHYRAHLQNQCQQCRKYFTSSKVFSLHQCDKEDSDPSKVFTCDENLVALINSYTPKDEKDDEKFYGHSDDEDEGAVEPNLIEHNDYMTQDEESQNSTDMNIHQMVHAPIISEVLSLYQQKEEEMPNNVVDLVDDNSLDGEDVVNIITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01146664;
90% Identity: iTF_01148259;
80% Identity: -