Basic Information

Insect: Papilio polyxenes
Gene Symbol: -
Assembly: GCA_026167825.1
Location: JAOPJD010000027.1:3046589-3055499[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0073 0.64 11.1 1.1 2 23 315 337 314 337 0.92

2 23 0.25 22 6.2 0.3 1 22 736 757 736 757 0.95

3 23 4.9 4.3e+02 2.2 0.3 1 22 799 820 799 822 0.82

4 23 0.0047 0.42 11.7 0.6 2 21 832 851 831 852 0.94

5 23 0.49 43 5.3 0.3 2 23 860 882 859 882 0.89

6 23 0.0078 0.69 11.0 0.1 3 23 903 924 901 924 0.96

7 23 0.0014 0.12 13.3 2.5 1 23 930 953 930 953 0.95

8 23 0.02 1.8 9.7 0.0 1 23 979 1002 979 1002 0.96

9 23 0.004 0.35 11.9 3.5 1 23 1007 1029 1007 1029 0.97

10 23 0.0052 0.46 11.5 0.3 1 23 1035 1058 1035 1058 0.95

11 23 0.0017 0.15 13.1 1.3 1 23 1072 1094 1072 1094 0.97

12 23 0.00013 0.011 16.6 1.8 1 23 1143 1166 1143 1166 0.97

13 23 0.0035 0.31 12.1 1.7 1 23 1229 1252 1229 1252 0.96

14 23 0.0008 0.071 14.1 2.1 2 23 1276 1298 1275 1298 0.95

15 23 0.063 5.6 8.1 0.1 2 23 1304 1326 1303 1326 0.93

16 23 0.0059 0.52 11.4 0.2 1 21 1369 1389 1369 1390 0.95

17 23 0.0003 0.027 15.4 1.0 1 23 1400 1422 1400 1422 0.93

18 23 6.4e-05 0.0056 17.5 0.3 2 23 1515 1537 1515 1537 0.93

19 23 4.5e-07 4e-05 24.3 1.1 3 23 1544 1564 1543 1564 0.98

20 23 0.022 2 9.5 0.4 3 23 1584 1604 1582 1605 0.94

21 23 0.088 7.7 7.7 0.0 1 23 1625 1647 1625 1647 0.97

22 23 0.004 0.35 11.9 0.4 1 23 1653 1676 1653 1676 0.96

23 23 0.00018 0.016 16.1 0.4 1 23 1684 1707 1684 1707 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0073	0.64	11.1	1.1	2	23	315	337	314	337	0.92
2	23	0.25	22	6.2	0.3	1	22	736	757	736	757	0.95
3	23	4.9	4.3e+02	2.2	0.3	1	22	799	820	799	822	0.82
4	23	0.0047	0.42	11.7	0.6	2	21	832	851	831	852	0.94
5	23	0.49	43	5.3	0.3	2	23	860	882	859	882	0.89
6	23	0.0078	0.69	11.0	0.1	3	23	903	924	901	924	0.96
7	23	0.0014	0.12	13.3	2.5	1	23	930	953	930	953	0.95
8	23	0.02	1.8	9.7	0.0	1	23	979	1002	979	1002	0.96
9	23	0.004	0.35	11.9	3.5	1	23	1007	1029	1007	1029	0.97
10	23	0.0052	0.46	11.5	0.3	1	23	1035	1058	1035	1058	0.95
11	23	0.0017	0.15	13.1	1.3	1	23	1072	1094	1072	1094	0.97
12	23	0.00013	0.011	16.6	1.8	1	23	1143	1166	1143	1166	0.97
13	23	0.0035	0.31	12.1	1.7	1	23	1229	1252	1229	1252	0.96
14	23	0.0008	0.071	14.1	2.1	2	23	1276	1298	1275	1298	0.95
15	23	0.063	5.6	8.1	0.1	2	23	1304	1326	1303	1326	0.93
16	23	0.0059	0.52	11.4	0.2	1	21	1369	1389	1369	1390	0.95
17	23	0.0003	0.027	15.4	1.0	1	23	1400	1422	1400	1422	0.93
18	23	6.4e-05	0.0056	17.5	0.3	2	23	1515	1537	1515	1537	0.93
19	23	4.5e-07	4e-05	24.3	1.1	3	23	1544	1564	1543	1564	0.98
20	23	0.022	2	9.5	0.4	3	23	1584	1604	1582	1605	0.94
21	23	0.088	7.7	7.7	0.0	1	23	1625	1647	1625	1647	0.97
22	23	0.004	0.35	11.9	0.4	1	23	1653	1676	1653	1676	0.96
23	23	0.00018	0.016	16.1	0.4	1	23	1684	1707	1684	1707	0.96

Sequence Information

Coding Sequence: ATGCATGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTTCTGGCCTCGCATCAAAAATCAGGGATTGCGTGTCTGTAGAGATAAACGAAGATGACGACCTGCCAACTAATGTTTGCAGAAAATGCTGTGACAATGTCAATAACTGGCACATTTTTAAGGATATATGTGAAAGGTCACAAAACAAACTACAGAGACTCATTAAAAATGATGGCAGCCAACTAGAAGAGGTGCAAATTAAAAATGAACCTTTATCTGATGAGGCTTATGATGATGGAGTGGTTATTGAAGGATCATACCCTGACCTTGAGTGTGCATCTACATCAAGCAAAGTACAGGCTGAAGGCCCTCCTATCTTGGCTTCGCTGGGTCTCACACCGAGGAGTGATAAGAATTATGTAGATCCAAGGATGGACTGGCAAAGAGTAAATGCAATATTGGACCTGGTTCAAAAAGATGAGGTCATTGACTCTCTGCAATCTGCCGAAGAATGTGATGTGTTACATCACTCTGATCATGACTCTGAATCTGAAACTGAATTAAGTTGTAACACTAATGCGGAATACCTTGATTGTGATAATGCAGCGGTGAATGCTCAAGTTATTTGGGCTTCTGAGAACTCGGGTAAAATAGTTAACAGGCGTTTGTTCATAAAGGAATTAGCTATTAGTCTTTTGGAAACTAAATGTTTATCAGTTCCGCTGGAAAATCAACTAAAGATCAAAAGATTTGCTACAATGGAAGAGTTTGCAACACCGAAAGGCAGGATAAGCGCTCAACAATATCCGAGCATGCCAGCTATGCCTGAGGTCTCCATCACAGTGATGCGTCCCACAGGAGAGACGCTGCACGCTCGACAAGGGATTCAACAACTCGCTTCGAAGGAGTGCCTCGTGTGCGGTCGATCTTACAGATATTCACATAACGCCAGGAGACATGAACTTAATGCTCACAGTTTTGACAGATACACTAACAAAGTAACCGCCAAGAAATCTCACAATACGCACATGCAGCCAAAACTTAGACCCAATCCGTTCAATCCCAAAGCGAGGCTCATGCCTAATCCTATTAGTCATAAAATGCAGTTGATCCCTAAAGGTATTAATGCAAAAATCATACAGAATAAAGCTCTTGCCCCACCAAAACCGATACCAGTTAAAACACCGAAGGGAACCCAAAATAATTTGCCGTACCCACTTCGTATTAAGGCTTTAAAAGACTTACAAATAAAGAAAAAGGAACCACAAATACTTAAGACTTTGTTGACAACGAAACCTGAAGTTTTGGTATCGGAACCGGAAATTCTTAATTCTGGTCCAGAAAGTCCTGAGACTTTGATATCTGAACCAGAAATAGCTTCGTTTCAGGTAGAGACTATACTTTCAGAACCGGATACTTATATACCACAAGATGATGACGATGTCGATGGCGAAATGCAAAATAATCAAGGTCAAAATTATGATACCGTTGACATGGATTCCGAAAATGAGATTGAGATAGCTCGTCAAAAAGAAAATGCTGGCGAAGATGAAGGGGATGGTGAAGGTGAAGGCGACGGTGATGGTGAAAGCGGTGGTGGTGGTGATCATCTGGTTATAAACGAAGGAGAAGAAGGTAACGAAATAGATAATGATGATGAAAATAACATGGAAAGACAACAAAGCGACAATGAAAATGACCAAGCAGACGACAATGCCGATAGCCAAGATGGGTTACAAGTCGGCAACGAGAACGATGACAGAGAAGAAGATGACGAGAATGGACATGAAACCAAAGAAGGCGATGAAGGAAATTATGAAAGAGACGATGAACAGATGGAGTACAATCAAGACGATGATGATGAGGAACTGCCTCCTATAGCCCCCGTTGTCGAAATCAACGAAGATATGCAAACAAATTCGTACAACAGTGAAGGAAACGATGATGATCTCGACGAAACGGCCGACCCTAACGATACAGCAGAGGACGTCAAAGAACTTGATCCTGATAAACTATATGTGACAAAGACGCAGAGAGATTTTATACTGAAGTATCGCGATATAATCGAACAAATTAATACAAAAAGATGTCTCTGTTGCGATAGGGAACATCCCCGCCGCAAAGCTGTCATACAACATTTGCAGAAAAATGGACACAAAGTCCCGAAACATACCTGTTACAACTGCGTCGTTACGTTTGGACATATCGGCGCTCTGCTCAGTCACATGCGCTCCAATACTTGTACAGATCTATGGAAGATCATTTACAATGAAAACGGTATCACCGAAGATTTAGTTCTGGAAGATGAACCTAAAGATACCAAAGTAGCATATAAAGACATATTCAATGCTAGATCTTATGCTTGCAAATTGTGTCCTGCTAAATTTCAATTGAAACAGTTTATAATGAAACACGTGTTGGACGTGCATGAAGATGGCCAGTCTCGGGTGCAGCTCGTCTGTGTTCACTGCAATTCAAGATTCAAAGATAAGGCGTTGTGGAAGAGGCACATACGCAACGGAGAATGCACAGTTTATATTTCATGCGATTTGTGTTCCGAAAGATTTGGCAACATGCAACATTTCAACGACCACGCATTAGCTGTACACGCCGGAAACTTCGACCAATCTGATAATCAGAACAAATGTGTCGACGGACGACCGACCGATTGTCCCGTTTGCGGGAAGAAGAACAGTAGCTACCCAAATTTAGTGAAACATTTAAAGATTATTCACAACGAGGAGAAACCTCATTACTGCCAGCACTGTGATTCTAAATTTGAGCAAGCCGCTGATCTAAACAAACACATATATATGGAGCATTCTGATAGAACATTGGGCGTGCAGAGCAACGAGCCCGACATGTCTCTCGTGAAGGAGGAAGCCGAGGAATACCACTACTCTTGCACAGAATGTAACGCCATTTTCGAAACTGTCGACGCTTGGACGGATCATCAGGTGACCGAACATAATCAAGTCGCTCACCATTGCGACCAATGCGATAAGAAATTCTTAAGACCGTCGGAACTTGCCGAGCACAAAAATACGCATTTGAGAGTTAAATTTTATCCTTGCAACATTTGCTCCAATTCGTACAGCACGCCCCAAAAGCTTTCTGAACACGTTCAGCAAAACCATCCTGGAGCCGCGGGAGCGTACGCACCCGTGGACTATGACTTTTTCTGTGACATATGCATCAGGTCGTTCAAGAGCCGCCAGGCCTACTCGAACCATATGCGCATACATGCTAAAGTCCCCACCACCAATAGAAAGCCCGGAGAACCGAAGGGATTCGCTCCGCAAATTGTCGGCAAGCCGATTAGATCCTTCTCGATGGTACAACCTAATTTTCTTTCTTTCAAACCTAATTGTAATGTTCCGAATGCGCCTTACTCTTGTGATATCTGTGGAAAAGGGTTCATGCACAAGAAAAATATTTGGAAGCACAAGAAAGTACTGCATGCGGACACCGCAGACCGAAACGACAGTGAAGAAAATACCATGCAGGCCTCCACCGAAGAGGACGAATTCAATTTAGACGAGAATGGTGTCGTCCTTTCGACACCGCAATTCAATAGCTTTAATTTTACTAATTTAGCAAACAACCTGCAGCAACAGGCCGCACAGACCCCACAGGAAGCCGCGCCTTATTCCTGCGAATTATGCTTCAAACGGTTTCCACTTAGGACAAGTTTATGGAAACACAAACGCGCCAAACACGGAATCATCAACGCCAGCGCCAGCGGCAGCTCCGATTCACCAATAATGGCCGGAGAAGGCGGCAGATCTAGTTGCACTATTTGTAAAATTACCTTTTCAGACAAAAAATCTTACTATCGTCACAGAAAGAACGTTCACAAATCGTCTGCCCAAATGTGTAAAATATGCGGAAAACCATTGAATTCAACGTTAGAATTATATGAGCATCTTAAGGCTGCCCACGCCAGAGAGTTGCTTGGATATAACGCGAGTCAAGGTCCCACTAAACAGGAGGGTACCCAAGAATTGGAAGGGGAATATGACGGTGATCAGGACTCTGTCGACCCCAGTGCGGAATATCAGGCCCGCTATCCTTGTGACCAATGTGGGAAACAATTCGTTGGATTGCTCGCGTTACAGAACCACCAATGTGTCAACCAACTACAATCATCACCTCAGACCTTCGACTGTGAAATATGCCACAAGAGTTACACCTCTATTTCTGCGCTAAAGAGCCATCGCGGCTGGCATTTGCGTTCTCCGGACGGCAAAGCGGCCGCCAACAATTCGGGTCTATGGATGCCTCAGCACAAGGTCACCAGCAAGGTCAGCAAACACGAAGTGGTCGATCCCTCGCAGCTCGCGCGCGTCTCCCACTCGACGCCGACGACACCCGCCAGCGTTGCTAAGAGGAGACTGCCACCGGAAGTCGAGGTCACCGTCGTAAATCCCAACAAGAAATTGCGTTCCGACGATTCAGTGGAATTGGAACAACAGAACAATTCCTCCACCGGAGCCGACGATAGGTACTGCAACATATGCGACAAAGAGTTCACCAAGCGAGCGGCCTACCAGCGGCACATGGACGAGGTGCACCAGCCCAACTCCGTGTTCTGTCCCGTCTGCGAGAAGAGTTTTACGCGCAAGTCGACATTGATCGTCCACATGAAGAAACATTACGGCGGCGAGGGCAGCTCCTCCGCCGCGGACCAGAACGAAGACGACGGCCTCGCGTGCGACATTTGCGGGGCGCAGTGCGATAACGAAAACGCTTTAAGAGCCCACCGAGCCATGCACCACGGTGATGATTCAGGAGAGTCTGAAGATGAGGGCAGCAGCGCGCCGCCTCCGGGCGAGTTCACATGCGGGCAGTGCGGAGACGGCGTGGCGACGCCGCGCGACCTCATCGCGCACCGCACCATGCACGCCACGCCAACCAAGTTCTACTGTAACATCTGCAAGGTGTACTTCGCGCGAGCAATCGACCTGTCGTCACACACGCGCGCGCGACACTCGGACAACGAGAAGGTGTTCTTCCCGTGCGCGATGTGCGACAGGTTCTACATGAATAAGAAGAGTTTGCAGCGACACATAGAGATGGCGCACTGA
Protein Sequence: MHVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPSGLASKIRDCVSVEINEDDDLPTNVCRKCCDNVNNWHIFKDICERSQNKLQRLIKNDGSQLEEVQIKNEPLSDEAYDDGVVIEGSYPDLECASTSSKVQAEGPPILASLGLTPRSDKNYVDPRMDWQRVNAILDLVQKDEVIDSLQSAEECDVLHHSDHDSESETELSCNTNAEYLDCDNAAVNAQVIWASENSGKIVNRRLFIKELAISLLETKCLSVPLENQLKIKRFATMEEFATPKGRISAQQYPSMPAMPEVSITVMRPTGETLHARQGIQQLASKECLVCGRSYRYSHNARRHELNAHSFDRYTNKVTAKKSHNTHMQPKLRPNPFNPKARLMPNPISHKMQLIPKGINAKIIQNKALAPPKPIPVKTPKGTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILSEPDTYIPQDDDDVDGEMQNNQGQNYDTVDMDSENEIEIARQKENAGEDEGDGEGEGDGDGESGGGGDHLVINEGEEGNEIDNDDENNMERQQSDNENDQADDNADSQDGLQVGNENDDREEDDENGHETKEGDEGNYERDDEQMEYNQDDDDEELPPIAPVVEINEDMQTNSYNSEGNDDDLDETADPNDTAEDVKELDPDKLYVTKTQRDFILKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITEDLVLEDEPKDTKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKALWKRHIRNGECTVYISCDLCSERFGNMQHFNDHALAVHAGNFDQSDNQNKCVDGRPTDCPVCGKKNSSYPNLVKHLKIIHNEEKPHYCQHCDSKFEQAADLNKHIYMEHSDRTLGVQSNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVTEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQNHPGAAGAYAPVDYDFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIVGKPIRSFSMVQPNFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADTADRNDSEENTMQASTEEDEFNLDENGVVLSTPQFNSFNFTNLANNLQQQAAQTPQEAAPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGSSDSPIMAGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQGPTKQEGTQELEGEYDGDQDSVDPSAEYQARYPCDQCGKQFVGLLALQNHQCVNQLQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVSHSTPTTPASVAKRRLPPEVEVTVVNPNKKLRSDDSVELEQQNNSSTGADDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLIVHMKKHYGGEGSSSAADQNEDDGLACDICGAQCDNENALRAHRAMHHGDDSGESEDEGSSAPPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFYCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01141080;
90% Identity: iTF_01140354;
80% Identity: -