Ppol017492.1
Basic Information
- Insect
- Papilio polyxenes
- Gene Symbol
- lrrfip2
- Assembly
- GCA_026167825.1
- Location
- JAOPJD010000027.1:960716-972563[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-74 3.6e-70 237.1 23.2 1 262 146 411 146 421 0.88 2 2 0.44 3.7e+03 -2.6 12.6 1 47 424 469 424 491 0.76
Sequence Information
- Coding Sequence
- ATGGGTCATAAATCGGAACTAACACCGGATAATAGTGACGAGGAGAGTGGTGAGGCCTTCACTGACGGAGATTTCGACGATTCAGGAGAAGAGGCTAGTGGTGAGGCCTTCACTGACGGAGATTTCGACGATTCAGGAGAAGAGGCTGTTATCGAACGATCTAATGTTACTAAAATAAGTCAACTACCGGTTAATGATACTGTAAATCTCAGCGTTGATATCGGCAAAGTTAATGATCCAAATAATGAAAATCAACCTGTGACGAATGGTAACGAGGACAACGGGGAAAACGTTGACAACGTAGAGAACGGTCACTGCGCTCCACTGGACGACTTGGACAATTATATAGAGCAAGGCGTGACGGATGCGCGCAAAGATTCTCAGAGCGAAATCAATCCGTCGATAGTCGGGATTCTCGGAGACCAGCACAACCATGCGGAGCAACGTCTGGCGGCGAGGCGCGCGGCGCGGGCGGAAGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGACAGCAGCGAGAGCAGGAGGACCATGCTGACAAGGCATTCGATATGTACTCAGAGACAGTGGGTCGTCGCGGAGGGCGACTGGCTTCGCTCAGCCCCGCCGTGCACTCGCCGAGGCGCAGCTCCGAGGACTCCGCAGACGACGTCTTTAGCATCAAAGACCTCAGGCACGAGCTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTCAACGCTCAGCTGGACAACGACAAGGCGGCGCTCGGGTACCAACTAGAGCTGCTCAAGGACCGCATCGAGGAGCTTACCGAGGAACACGCGCAGCTGCAGCGTGAACATAAAGAGAAGTGCTCAGCGCACGAGCGGCTAAAACGAGAGCACGCCACATTGGAGCGCGAGGTGACTGCAGCGCGGGACGCGGTGCGTGCGCGGGACTCCGCCGCCGCCGCCGCGGGCTTCGCCTTCGTGGAGGCGGAGCTCAATGGCACCGCGGAGCAAACAGAGCTGAACGGGATGGAGCCCGAGCTGGTTGCGCAGGGCTTCGGCAGCGTGCCACCCCTCGCCCTCGTCTCACACCACTCGGAACAGCTTCTCAATGATGCCGGAGAGGGCACACTTGACGTGCGGTTGCAGCGACTGGTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGGAAGTTGAAGCTGTGCCTGAACGAGGAGCGCGCCGCGCGACAGAACGTGGAATCGCTGCGCAAGTCTGTGTCGGAGGCGAAGGGTCGCGCGGCGCGGGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCGGTGGCGCGGCTGGAGGCGCAGGTCGCACGACTGCGCGCGCGTCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAGGCTGCAGAGGGAGGCTCGAGAAGCTTTGAATCGAGTTGAGGAGTTGGAAACGGAGAACATTAACGTGTCGTGCCATCGCGCACCAAATAAATTAGCATACAGTAAATAG
- Protein Sequence
- MGHKSELTPDNSDEESGEAFTDGDFDDSGEEASGEAFTDGDFDDSGEEAVIERSNVTKISQLPVNDTVNLSVDIGKVNDPNNENQPVTNGNEDNGENVDNVENGHCAPLDDLDNYIEQGVTDARKDSQSEINPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYSETVGRRGGRLASLSPAVHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELTEEHAQLQREHKEKCSAHERLKREHATLEREVTAARDAVRARDSAAAAAGFAFVEAELNGTAEQTELNGMEPELVAQGFGSVPPLALVSHHSEQLLNDAGEGTLDVRLQRLVSSKQALESEVRKLKLCLNEERAARQNVESLRKSVSEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENINVSCHRAPNKLAYSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01144551;
- 90% Identity
- -
- 80% Identity
- -