Pmac009727.1
Basic Information
- Insect
- Papilio machaon
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_001298355.1
- Location
- NW:3631946-3640768[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-74 2.1e-70 237.0 23.5 1 262 129 394 129 417 0.87 2 2 0.028 3.8e+02 -0.2 0.3 213 238 432 456 415 457 0.66
Sequence Information
- Coding Sequence
- ATGGGTCATAAATCTGAACAAACACCGGATAATAGTGACGAGGAGAGCGGTGAGGCCTTCACTGACGGTGATTTCGACGATTCAGGAGAAGAGGCTGTTATCGAACGATCTAATGTTACCAAAATAAGTCAACTACCGATTAATGATACTGTCAATCCCAACGTTGATATTTGCAAAGTTAATGATCCAAATAATGAAAATCAACCTGTGACAAATGGTAACGATGACAACGCGGAAACCGTTGACAACGTAGAAAACGGTCACTGCGCTCCACTGGACGACTTGGACAATTATATGGAGCAAGGCGTGACGGATGCGCGCAAAGATTCTCAGAGCGAAATCAATCCGTCGATAGTCGGGATTCTCGGAGATCAGCACAACCATGCGGAGCAACGTCTGGCGGCGAGGCGCGCGGCGCGGGCGGAAGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGACAGCAACGAGAGCAGGAGGACCATGCTGACAAGGCATTCGATATGTATTCAgAGACAGTGGGTCGTCGCGGCGGCCGACTGGCGTCGCTCAGCCCCGCCGTGCACTCGCCGAGGCGCAGCTCTGAGGACTCCGCTGACGATGTCTTTAGCATCAAAGACCTCAGGCACGAGCTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTCAACGCTCAGCTGGACAACGACAAGGCGGCGCTCGGGTACCAGCTAGAGCTTCTCAAGGACCGCATCGAGGAGCTCACCGAGGAGCACGCGCAGCTGCAGCGTGAACATAAAGAGAAGTGCTCAGCGCACGAGCGGCTAAAACGAGAGCACGCCACATTGGAGCGCGAGGTGACTGCAGCGCGAGACGCGGTACGTGCGCGGGactccgccgccgccgccgcgggCTTCGCCTTCGTGGAGGCGGAGCTCAACGGCACCGCGGAGCAAACAGAGCTGAACGGGATGGAGCCCGAGCTGGTTGCGCAGGGCTTCGGCAGCGTGCCACCCCTCGCCCTCGTCTCACACCACTCGGAACAGCTGCTCAATGACGCCGGAGAGGGCACACTTGACGTGCGGTTGCAGCGACTGGTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGGAAGCTGAAGCTGTGCCTGAACGAGGAGCGCGCCGCGCGACAGAACGGTGTCGCCGCGCACCACGACAGGGAGCTCGACAGCGAGCGTGAGTACATACATGCGCACACGCACGCACTAACGTACGTGCAACGTATACGTACGTACGGAGCTCGAGAAGCTTTGAATCGGGTTGAGGAGTTGGAAACGGAGAACAGTCACCTGACGAAGCGACTTGACAAACTCAAGAACGCCAAATCAGCGCTACTGAAGGAGCTGTGA
- Protein Sequence
- MGHKSEQTPDNSDEESGEAFTDGDFDDSGEEAVIERSNVTKISQLPINDTVNPNVDICKVNDPNNENQPVTNGNDDNAETVDNVENGHCAPLDDLDNYMEQGVTDARKDSQSEINPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYSETVGRRGGRLASLSPAVHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELTEEHAQLQREHKEKCSAHERLKREHATLEREVTAARDAVRARDSAAAAAGFAFVEAELNGTAEQTELNGMEPELVAQGFGSVPPLALVSHHSEQLLNDAGEGTLDVRLQRLVSSKQALESEVRKLKLCLNEERAARQNGVAAHHDRELDSEREYIHAHTHALTYVQRIRTYGAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01148107;
- 90% Identity
- -
- 80% Identity
- -