Pphe020257.1
Basic Information
- Insect
- Papilio phestus
- Gene Symbol
- -
- Assembly
- GCA_018231625.1
- Location
- DVQH01012720.1:527-4763[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.039 4.6 9.4 1.3 2 23 57 79 56 79 0.92 2 22 0.32 37 6.5 0.3 1 22 480 501 480 501 0.95 3 22 6.2 7.3e+02 2.5 0.3 1 22 543 564 543 566 0.82 4 22 0.006 0.71 11.9 0.6 2 21 576 595 575 596 0.94 5 22 0.62 73 5.6 0.3 2 23 604 626 603 626 0.89 6 22 0.007 0.83 11.7 0.1 3 23 647 668 645 668 0.96 7 22 0.0087 1 11.4 3.5 1 23 674 697 674 697 0.95 8 22 0.12 14 7.9 0.0 1 23 723 746 723 746 0.90 9 22 0.0051 0.6 12.2 3.5 1 23 751 773 751 773 0.97 10 22 0.0044 0.52 12.4 1.1 1 23 779 801 779 802 0.95 11 22 0.0022 0.25 13.3 1.3 1 23 816 838 816 838 0.97 12 22 0.00016 0.019 16.9 1.8 1 23 887 910 887 910 0.97 13 22 0.0044 0.52 12.4 1.7 1 23 973 996 973 996 0.96 14 22 0.001 0.12 14.4 2.1 2 23 1020 1042 1019 1042 0.95 15 22 0.081 9.5 8.4 0.1 2 23 1048 1070 1047 1070 0.93 16 22 0.00075 0.089 14.8 0.4 1 23 1113 1135 1113 1135 0.98 17 22 0.00039 0.046 15.7 1.0 1 23 1144 1166 1144 1166 0.93 18 22 8.2e-05 0.0096 17.8 0.3 2 23 1260 1282 1260 1282 0.93 19 22 5.7e-07 6.7e-05 24.6 1.1 3 23 1289 1309 1288 1309 0.98 20 22 0.011 1.3 11.1 0.1 3 23 1330 1350 1328 1351 0.94 21 22 0.11 13 7.9 0.0 1 23 1371 1393 1371 1393 0.97 22 22 9.3 1.1e+03 1.9 0.3 1 12 1399 1410 1399 1412 0.88
Sequence Information
- Coding Sequence
- ATGGAGAGCGAAAATaatgaagaagatgaagaaatgAATGAAGAGATGAATGAGTCTACTCAACAATATCCGGGCGTGCCCGCCATGCCCGAGGTGTCCATCACCGTAATGCGCCCCACAGGAGAGACGCTGCACGCCCGCCAAGGGATACAGCAACTCGCGTCCAAAGAGTGCCTCGTGTGCGGACGATTTTACAGATATTCACATAACGCCAGGCGACATGAACTTAACGCTCACAGTTTTGACAGATACACTAACAAAGTAACCAACAAGAAATCTCACAATACACACAGGCAGCCGAAACTTAGACCCAATCCGTTCAATCCCAAAGCGAGGCTCATGCCTAATCCTATTAGTCATAAAATGCAGTTGATTCCTAAAGGGATTAATGCCAAAATCATACAGAATAAGCCTGCCACCCCATCCAAACCTATACCAATTAAAACACCAAAGGGAACCCAAAATAATTTGCCATACCCGCTTCGTATTAAGGCATTAAAAGATTTACagataaagaaaaaggaaCCACAAATCCTTAAGACTCTATTGACAACGAAACCTGAAGTTTTGGTATCAGAACCGGAAATTCTTAATTCTGGTCCAGAAAGTCCGGAGACTTTGATATCTGAACCAGAAATAGCATCGTTCCAAGTAGAGACTATCCTTTCGGAACCGGATACTTATATGCcacaagatgatgatgatatcgaTGGTGAAATGCAAAATAATCAAGGTCATAATTACGATACTGTTGACATGGACTCCGAAAATGAGATTGAGATAGCTCGTCAAAAAGAAAACGTCGAAGGTGATGGGGATGGCGAAGGTGAAGGGGATGGTGATGGAGATGGCGATGGTGAAGGCGGTGTGGGTGATCATTTGGTCATTAACGAAAGGGAGGAAGGTAACGAAATGGACAATGACGATGAAAATAACATGgaaagaaatcaaagcgacAATGAAAATGATCACGCAGATGACAATGCCGATAGCCAGGATGGGTTACAAATCGACAACGAGAATGATGGCAGAGACGAAGATTATGAGAATGGACATGAAACCAAAGAAGGCGAAGAAGGTATTGATGAACGGGACGATGAACAAATGGATTACAATCaagatgacgatgatgagGAACTGCCACCTATAGCACCCGTTGTTGAAATCAACGAAGACATGCAGACAAATTCGTACAACAGTGAAGGAAACGATGAAGATCTCGACGAAACCGCTGACCCTAACGACACAGTGGAGGACGTCAAGGAACTCGACCCTGATAAGCTATATGTGACAAAGACTCAGCgagattttatacaaaaatatcgcGATATAATCGAACAGATTAATACAAAAAGATGCCTCTGTTGTGATAGAGAACATCCCCGCCGCAAAGCTGTCATACAACATTTGCAGAAAAATGGACACAAAGTCCCGAAACACACGTGCTACAACTGCGTTGTTACCTTTGGCCATATCGGAGCTCTGCTCAGTCACATGCGCTCCAATACTTGCACAGATCTATGGAAGattatttacaatgaaaatggCATCACCGAAGATTTAGTTTTGGAGGACGAACCTAAAGATACCAAAGTAGCGTATAAAGATATATTCAATGCTAGGTCTTATGCTTGCAAATTATGTCCGGCTAAATTCCAATTGAAACAGTTTATAATGAAACATGTGCTGGACGTGCATGAAGATGGTCAGTCTCGCGTACAGCTCGTCTGCGTCCACTGCAACTCGAGATTCAAAGATAAGGCGTTGTGGAAGAGGCACATACGCAACGGAGAATGTACCGTTTATATTTCATGCGATTTGTGTTCCGAAAGATTTGGCAATATGCAACATTTCAACGACCACGCATTAGCCGTACACGCCGGGAACTTCGACCAATCTGATAATCAGAACAAATGTGTCGACGGACGTCCGACCGATTGTCCAGTTTGTGGGAAGAAGAACAGCACCTATCCAAATTTAGTGAAACATTTAAAGATTATTCACAACGAGGAGAAACCTCATTACTGCCAGCATTGCGATTCTAAATTTGAACAAACTGCTGATCTTAATAAACACATCTATATGGAACATTCTGATAGAACATTAGGCGTGCAGAGCAACGAGCCCGACATGTCTCTCGTGAAGGAGGAAGCCGAGGAATACCACTACTCTTGCACAGAATGTAACGCCATATTCGAAACTGTCGACGCTTGGACGGATCATCAGGTGGCCGAACATAATCAAGTCGCTCACCATTGCGACCAATGTGACAAGAAATTTTTAAGGCCGTCGGAACTGGCGGAGCACAAAAATACGCATTTGAGAGTTAAATTTTATCCTTGCAACATTTGTTCCAATTCGTACAGCACACCCCAAAAACTTTCTGAACACGTTCAGCAACACCATCCCGGAGCAGCGGGGGCGTACGCGCCCGTGGACTACGACTTCTTCTGCGACATCTGCATTCGGTCGTTCAAAAGCCGCCAGGCGTACTCGAACCACATGCGCATTCACGCCAAAGTGCCCACCACAAATAGAAAACCCGGAGAACCGAAAGGATTCGCTCCGCAAATTGTCGGTAAACCAATTAGATCCTTCTCGATGGTACAACCCACTTTCCTTCCATTCAAACCCAATTGTAACGTCCCGAATGCGCCTTACTCCTGTGATATCTGCGGAAAAGGTTTCATGcacaagaaaaatatttggaaGCACAAGAAAGTGCTACATGCAGACGCCGCGGAACGAAACGACAGCGAGGAGAACACCATGCAGGCCTCCACCGAAGAGGACGAATACAATTTAGACGAAAACGGAGCTGTTCTTTCGACGCCGCAATTCAATAGTTTTAACTTTACTAATTTAGCAAACAACTTGCAGCAACAGGCTGCGCAGCCCCCCCAGGACGCCACACCTTATTCTTGCGAATTGTGTTTCAAACGGTTTCCACTTAGAACTAGTTTATGGAAACACAAACGCGCTAAGCACGGAATCATCAACGCCAGCGCCAGCGGAAGCTCGGATTCGCCAATAATGGCTGGAGAAGGCGGGAGATCGAGTTGCACTATatgtaaaattactttttcagACAAAAAATCATACTACCGTCACAGAAAGAATGTTCACAAATCCTCGGCGCAAATGTGCAAAATATGCGGAAAACCATTGAATTCTACGTTAGAATTATACGAGCATCTCAAGGCCGCCCATGCCAGGGAATTACTCGGATATAACGCAAGTCAAGTTCCCACTAAACAGGAGCCCACTCAAGAATTGGAAGGGGAATATGACGGTGACCAGGATTCGGTCGACCCCAGTGCCGAATATCAAGCTCGCTACCCGTGCGACAACTGCGGCAAACAATTCGTCGGCTTGCTAGCTTTACAGAACCACCAATGCATACACCAGTCACAATCATCTCCTCAGACTTTTGACTGCGAAATATGTCATAAGAGTTATACTTCTATTTCTGCGCTAAAGAGTCACCGCGGCTGGCATCTACGTTCCCCGGACGGCAAAGCGGCTGCCAACAATTCGGGGCTTTGGATGCCTCAGCATAAAGTTACCAGCAAAGTCAGTAAGCACGAGGTGGTGGACCCCTCGCAGCTCGCGCGCGTCACTCATTCGACGCCGACGCCGACGCCCGCTAGTGTCGCTAAAAGGAGACTGCCGCCGGAAGTCGAGGTCACCGTCGTGAATCCCAACAAGAAGTTGCGTTCCGACGATTCGGTGGAATTggaacaacaaaacaattccTCCACCGGGACCGAAGATAGATACTGCAATATATGTGACAAGGAGTTCACCAAGCGAGCGGCCTACCAGCGGCACATGGACGAGGTGCACCAGCCCAACTCCGTGTTCTGTCCCGTCTGCGAGAAGAGTTTCACGCGCAAGTCGACGTTGATCGTTCACATGAAGAAACACTACGGTGGCGGCGAGGGCAGCTCCACCGGCGTCGACCAGAACGAAGATGACGGCCTCGCTTGCGACATTTGCGGGGCGCAGTACGACAATGAGAACGCTTTAAGAGCCCACCGAGCCATGCACCATGGTGATGATTCCGGCGAATCGGAAGAGGAGGGTAACAGCGCGCAGCCCCCGGGCGAGTTCACGTGCGGGCAGTGCGGGGACGGTGTGGCGACGCCGCGCGACCTCATCGCCCACCGCACTATGCACGCCACGCCTACCAAGTTCTACTGCAACATCTGTAAAGTGTACTTCGCACGCGCCATCG
- Protein Sequence
- MESENNEEDEEMNEEMNESTQQYPGVPAMPEVSITVMRPTGETLHARQGIQQLASKECLVCGRFYRYSHNARRHELNAHSFDRYTNKVTNKKSHNTHRQPKLRPNPFNPKARLMPNPISHKMQLIPKGINAKIIQNKPATPSKPIPIKTPKGTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILSEPDTYMPQDDDDIDGEMQNNQGHNYDTVDMDSENEIEIARQKENVEGDGDGEGEGDGDGDGDGEGGVGDHLVINEREEGNEMDNDDENNMERNQSDNENDHADDNADSQDGLQIDNENDGRDEDYENGHETKEGEEGIDERDDEQMDYNQDDDDEELPPIAPVVEINEDMQTNSYNSEGNDEDLDETADPNDTVEDVKELDPDKLYVTKTQRDFIQKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITEDLVLEDEPKDTKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKALWKRHIRNGECTVYISCDLCSERFGNMQHFNDHALAVHAGNFDQSDNQNKCVDGRPTDCPVCGKKNSTYPNLVKHLKIIHNEEKPHYCQHCDSKFEQTADLNKHIYMEHSDRTLGVQSNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQHHPGAAGAYAPVDYDFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIVGKPIRSFSMVQPTFLPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADAAERNDSEENTMQASTEEDEYNLDENGAVLSTPQFNSFNFTNLANNLQQQAAQPPQDATPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGSSDSPIMAGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQVPTKQEPTQELEGEYDGDQDSVDPSAEYQARYPCDNCGKQFVGLLALQNHQCIHQSQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTPTPTPASVAKRRLPPEVEVTVVNPNKKLRSDDSVELEQQNNSSTGTEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLIVHMKKHYGGGEGSSTGVDQNEDDGLACDICGAQYDNENALRAHRAMHHGDDSGESEEEGNSAQPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFYCNICKVYFARAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141080;
- 90% Identity
- iTF_01140354;
- 80% Identity
- -