Pmac009610.1
Basic Information
- Insect
- Papilio machaon
- Gene Symbol
- -
- Assembly
- GCA_001298355.1
- Location
- NW:1744501-1753381[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.006 0.32 11.2 1.1 2 23 210 232 209 232 0.92 2 23 0.21 11 6.3 0.3 1 22 631 652 631 652 0.95 3 23 4.1 2.2e+02 2.3 0.3 1 22 694 715 694 717 0.82 4 23 0.0039 0.21 11.8 0.6 2 21 727 746 726 747 0.94 5 23 0.4 22 5.4 0.3 2 23 755 777 754 777 0.89 6 23 0.0065 0.35 11.1 0.1 3 23 798 819 796 819 0.96 7 23 0.0011 0.061 13.4 2.5 1 23 825 848 825 848 0.95 8 23 0.076 4 7.7 0.0 1 23 874 897 874 897 0.90 9 23 0.0033 0.18 12.0 3.5 1 23 902 924 902 924 0.97 10 23 0.0043 0.23 11.6 0.3 1 23 930 953 930 953 0.95 11 23 0.0014 0.075 13.2 1.3 1 23 967 989 967 989 0.97 12 23 0.00011 0.0057 16.7 1.8 1 23 1038 1061 1038 1061 0.97 13 23 0.0029 0.15 12.2 1.7 1 23 1124 1147 1124 1147 0.96 14 23 0.00067 0.036 14.2 2.1 2 23 1171 1193 1170 1193 0.95 15 23 0.053 2.8 8.2 0.1 2 23 1199 1221 1198 1221 0.93 16 23 0.0049 0.26 11.4 0.2 1 21 1264 1284 1264 1285 0.95 17 23 0.00025 0.014 15.5 1.0 1 23 1295 1317 1295 1317 0.93 18 23 5.3e-05 0.0028 17.6 0.3 2 23 1409 1431 1409 1431 0.93 19 23 3.7e-07 2e-05 24.4 1.1 3 23 1438 1458 1437 1458 0.98 20 23 0.018 0.98 9.6 0.4 3 23 1478 1498 1476 1499 0.94 21 23 0.073 3.9 7.8 0.0 1 23 1519 1541 1519 1541 0.97 22 23 0.0033 0.18 12.0 0.4 1 23 1547 1570 1547 1570 0.96 23 23 0.00015 0.0082 16.2 0.4 1 23 1578 1601 1578 1601 0.96
Sequence Information
- Coding Sequence
- atgcGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTTCTGGCCTCGCATCAAAAATCAGGGATTGCGTGTCTGTAGAGATAAACGAAGATGACGACCTGCCAACTAATGTTTGCAGAAAATGCTGTGACAATGTCAATAACTGGCACTTTTTTAAGGATATATGTGAAAGGTCACAAAACAAACTACAGAGACTCATTAAAAATGATGGCAGCCAACTAGAAGAGgtgcaaattaaaaatgaacctTTATCTGATGAGGCTTATGATGATGGAGTGGTTATTGAAGGATCATACCCTGACCTTGAGTGTGCATCTACATCAAGCAAAGTACAAGCTGAAGGCCCTCCTATCTTGGCTTCGCTGGGTCTCACACCGAGGAGTGATAAGGGAATGGAGAGCGAAAATAACGAGGAGGAAGATGAAGAAATGAACGAAGACGAGATGAATGGTACCGCTCAACAATATCCGAGCATGCCAGCTATGCCTGAGGTCTCCATCACTGTGATGCGTCCCACAGGAGAGACCCTGCACGCTCGACAAGGGATTCAACAACTCGCTTCGAAGGAGTGCCTCGTGTGCGGCCGATCTTACAGATATTCACATAACGCCAGACGACATGAACTTAATGCTCACAGTTTTGACAGATACACTAACAAAGTAACCGCCAAGAAATCTCACAATACACACATGCAACCAAAACTTAGACCCAATCCGTTCAATCCCAAAGCGAGGCTCATGCCTAATCCTATTAGTCATAAAATGCAGTTGATCCCTAAAGGTATTAATGCAAAAATCATACAGAATAAAGCTCTTGCCCCACCAAAACCGATACCAGTTAAAACACCAAAGGGAACCCAAAATAATTTGCCGTACCCACTTCGTATTAAGGCTTTAAAAGacttacaaataaagaaaaaggaaCCACAGATCCTTAAGACTTTGTTGACAACGAAACCTGAAGTTTTGGTATCGGAACCGGAAATTCTTAATTCTGGTCCAGAAAGTCCTGAGACTTTGATATCTGAACCAGAAATAGCTTCGTTTCAAGTAGAGACTATACTTTCAGAACCGGATACTTATATTCCACAAGATGATGACGATGTCGATGGTGAAATGCAAAATAATCAAGGTCAAAATTATGATACCGTTGACATGGATTCCGAAAATGAGATTGAGATAGCTCGTCAAAAAGAAAATGCTGGCGAAGATGAAGGGGATGGTGAAGGTGAAGGCGACGGTGATGGTGAAAGCGGTGGTGGTGGTGATCATCTGGTTATAAACGAAGGGGAAGAAGGTAACGAAATggataatgatgatgaaaataacATGGAAAGGCAACAAAGCGACAATGAAAATGACCAAGCAGACGACAATGTCGATAGCCAAGATGGGTTACAAGTCGGCAACGAGAACGATGGCAGAGAAGAAGATGACGAGAATGGACATGAAACCAAAGAAGGCGATGAAGGAAATGATGAAAGAGACGATGAACAGATGGAGTACAATCAAGACGATGATGATGAGGAACTGCCTCCTATAGCCCCCGTTGTCGAAATCAACGAAGATATGCAAACAAATTCGTACAACAGTGAAGGAAACGACGATGATCTCGACGAAACGGCCGACCCTAACGACACAGCAGAGGATGTCAAAGAACTTGATCCCGATAAACTATATGTGACAAAGACGCAGAGAGATTTTATACTGAAATATCGCGATATCATCgaacaaattaatacaaaaagatGTCTCTGTTGCGATAGGGAACATCCCCGCCGCAAAGCTGTCATACAACATTTGCAGAAAAATGGACACAAAGTCCCCAAACATACCTGTTACAACTGCGTTGTTACATTTGGACATATCGGCGCTCTGCTCAGTCACATGCGCTCCAATACTTGCACAGATCTATGGAAGATCATTTACAATGAAAACGGTATCACCGAAGATTTAGTTCTGGAGGATGAACCTAAAGATACCAAAGTAGCATATAAAGACATATTCAATGCTAGATCTTATGCTTGCAAATTGTGTCCTGCTAAATTCCAATTGAAACAGTTTATAATGAAACACGTGTTGGACGTGCATGAAGATGGCCAGTCTCGGGTGCAGCTCGTCTGTGTTCACTGCAATTCCAGATTCAAAGATAAGGCGTTGTGGAAGAGGCACATACGCAACGGAGAATGCACCGTGTATATTTCATGCGATTTGTGTTCAGAAAGATTTGGCAACATGCAACATTTCAACGACCACGCATTAGCAGTACACGCCGGAAACTTCGACCAATCTGATAATCAGAACAAATGTGTCGACGGACGACCGACCGATTGTCCCGTTTGCGGGAAGAAGAACAGTAGCTATCCAAATTTagttaaacatttaaagattattCACAACGAGGAGAAACCTCATTACTGCCAGCACTGTGATTCCAAATTTGAGCAAGCAGCTGATCTAAACAAACACATCTATATGGAGCATTCTGATAGAACATTGGGCGTGCAGAGCAACGAGCCCGACATGTCTCTCGTGAAGGAGGAAGCCGAGGAATACCACTACTCTTGCACAGAATGCAACGCCATATTCGAAACCGTCGACGCTTGGACGGATCATCAGGTGGCCGAACATAATCAAGTCGCTCACCATTGCGACCAATGCGATAAGAAATTCTTAAGACCGTCGGAACTCGCCGAGCACAAAAATACGCATTTGAGAGTTAAATTTTATCCTTGCAACATTTGCTCCAACTCGTACAGCACGCCCCAAAAGCTTTCTGAACACGTTCAGCAAAACCATCCTGGAGCCGCGGGAGCGTACGCGCCCGTGGACTATGACTTTTTCTGTGACATATGTATCAGATCGTTCAAGAGCCGCCAGGCCTACTCGAACCATATGCGCATACATGCTAAAGTCCCCACCACCAATAGAAAACCCGGGGAACCGAAGGGATTCGCTCCGCAAATTGTCGGCAAGCCGATTAGATCCTTCTCGATGGTACAACctaattttctttctttcaaacCTAATTGTAACGTTCCGAATGCGCCTTACTCTTGTGATATCTGTGGAAAAGGGTTCATgcacaagaaaaatatttggaaGCACAAGAAAGTACTGCATGCGGACACCGCAGACCGAAACGACAGTGAAGAAAATACCATGCAGGCCTCCACCGAAGAGGACGAATTCAATTTAGACGAGAATGGTGTCGTCCTTTCGACTCCGCAATTCAATagctttaattttactaatttagcAAACAATCTGCAGCAACAGGCCGCACAGACCCCACAGGAAGCCGCGCCTTATTCCTGCGAATTATGCTTCAAACGATTTCCACTTAGGACAAGTTTATGGAAACACAAACGCGCCAAACACGGAATCATCAATGCCAGCGCCAGCGGCAGCTCCGATTCACCAATAATGGCCGGAGAAGGCGGCAGATCGAGTTGcactatttgtaaaattactttttcagacaaaaaatcttactatcGTCACAGAAAGAACGTTCACAAATCGTCTGCCCAAATGTGCAAAATATGCGGAAAACCATTGAATTCAACGTTAGAATTATATGAGCATCTTAAGGCTGCCCACGCCAGAGAGTTGCTAGGATATAACGCGAGTCAAGGTCCCACTAAACAGGAGGGTACCCAAGAATTGGAAGGGGAATATGACGGTGATCAGGACTCGGTCGACCCCAGTGCGGAATATCAGGCCCGCTATCCGTGTGACCAATGTGGCAAACAATTCGTCGGATTGCTCGCGTTACAGAACCACCAATGTGTAAACCAACTACAATCATCTCCTCAGACCTTCGACTGTGAAATATGCCACAAGAGTTACACCTCTATTTCTGCGCTAAAGAGCCATCGCGGGTGGCATTTGCGTTCTCCGGACGGCAAAGCGGCCGCCAACAATTCGGGTCTATGGATGCCTCAGCATAAGGTCACCAGCAAGGTCAGCAAACACGAAGTGGTCGATCCCTCGCAGCTCGCGCGCGTCTCCCACTCGACGCCGACGCCCGCCAGCGTCGCCAAGAGGAGACTGCCACCGGAAGTCGAGGTCACCGTCGTAAATCCCAACAAGAAATTGCGATCCGACGATTCGGTGGAATTGGAACAACAGAACAATTCCTCCACCGGAGCCGACGATAGGTACTGCAACATATGCGACAAAGAGTTCACCAAGCGAGCGGCCTACCAGCGGCACATGGACGAGGTGCACCAGCCCAACTCCGTGTTCTGTCCCGTCTGCGAGAAGAGTTTTACGCGCAAGTCGACATTGATCGTCCACATGAAGAAACATTACGGCGGCGAGGGCAGCTCCTCCGCCGCGGACCAGAACGAAGACGACGGCCTCGCGTGCGACATTTGCGGGGCGCAGTGCGATAACGAGAACGCTTTAAGAGCCCACCGAGCCATGCACCACGGTGATGATTCAGGAGAGTCTGAAGATGAGGGCAGCAGTGCGCCGCCCCCGGGCGAGTTCACATGCGGGCAGTGCGGAGACGGCGTGGCGACGCCGCGCGACCTGATCGCGCACCGCACCATGCACGCCACGCCGACCAAGTTCTACTGTAACATCTGCAAGGTGTACTTCGCGCGTGCAATCGACCTGTCCTCACACACGCGCGCGCGACACTCAGACAACGAGAAGGTGTTCTTCCCGTGCGCGATGTGCGACAGGTTCTATATGAATAAGAAGAGTTTGCAGCGACACATCGAGATGGCGCACTGA
- Protein Sequence
- MRVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPSGLASKIRDCVSVEINEDDDLPTNVCRKCCDNVNNWHFFKDICERSQNKLQRLIKNDGSQLEEVQIKNEPLSDEAYDDGVVIEGSYPDLECASTSSKVQAEGPPILASLGLTPRSDKGMESENNEEEDEEMNEDEMNGTAQQYPSMPAMPEVSITVMRPTGETLHARQGIQQLASKECLVCGRSYRYSHNARRHELNAHSFDRYTNKVTAKKSHNTHMQPKLRPNPFNPKARLMPNPISHKMQLIPKGINAKIIQNKALAPPKPIPVKTPKGTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILSEPDTYIPQDDDDVDGEMQNNQGQNYDTVDMDSENEIEIARQKENAGEDEGDGEGEGDGDGESGGGGDHLVINEGEEGNEMDNDDENNMERQQSDNENDQADDNVDSQDGLQVGNENDGREEDDENGHETKEGDEGNDERDDEQMEYNQDDDDEELPPIAPVVEINEDMQTNSYNSEGNDDDLDETADPNDTAEDVKELDPDKLYVTKTQRDFILKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITEDLVLEDEPKDTKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKALWKRHIRNGECTVYISCDLCSERFGNMQHFNDHALAVHAGNFDQSDNQNKCVDGRPTDCPVCGKKNSSYPNLVKHLKIIHNEEKPHYCQHCDSKFEQAADLNKHIYMEHSDRTLGVQSNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQNHPGAAGAYAPVDYDFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIVGKPIRSFSMVQPNFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADTADRNDSEENTMQASTEEDEFNLDENGVVLSTPQFNSFNFTNLANNLQQQAAQTPQEAAPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGSSDSPIMAGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQGPTKQEGTQELEGEYDGDQDSVDPSAEYQARYPCDQCGKQFVGLLALQNHQCVNQLQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVSHSTPTPASVAKRRLPPEVEVTVVNPNKKLRSDDSVELEQQNNSSTGADDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLIVHMKKHYGGEGSSSAADQNEDDGLACDICGAQCDNENALRAHRAMHHGDDSGESEDEGSSAPPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFYCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141080;
- 90% Identity
- iTF_01140354;
- 80% Identity
- -