Phel030940.1
Basic Information
- Insect
- Papilio helenus
- Gene Symbol
- lolal
- Assembly
- GCA_026546675.1
- Location
- JAOCNA010000025.1:4602352-4608598[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-16 7.5e-13 49.2 0.0 1 42 332 374 332 377 0.94
Sequence Information
- Coding Sequence
- ATGTCGCaacagtacagtttgcgttggaataaccatcagcctaacttcatatcaatgttcactacattattaaatacccaaaccctcgtggatgtcacattagctgcagagggcaagcatttaaaagcacataaagtggtgttgtccgcttgcagtacttattttcaggctgttttagttgacaatccttcaaggcatccaattgtgattcttaaagatgtctcatattctgaccttcgtaccatggtagactttatgtactatggtgaagtaaatgtaaccgaggaacaactaccaCAAGTACTTGATACAGCAAAGCTCTTGAAAATCAAAGGGCTCACAGAAATGCCAGAATCCACCTCTCTGACGCGTTCCCAGGGGACTTCTGCAGACTTCCAGTCCCCGGGTGACTCGATAGACTCCCAAAGACACTCAGCTTCACCGGCGGCCTCGCCTTCAAACAAACGTAGAAGACGACGAAAGAGTTCAACTGGTTCAACATCTCTGAACATGGTACCGGAAGAAAATAGAAATGATGAGCCGGGACAATCTGTTGATTTAGTGCGAGGAGATTCGATCACCTTGAGCAGTGTGCCACAACAAAGACGCATGAGGGATTTCCAAGATGAGCAAATTGATAATGTGCAACAGCCGACTGATCAACACAGCCTGCATGTGGACCAGTTGTCATTGGATAACAATTCAGCTATTATTCCACAAGGAGGCCAATGGAGTATGATGGAGCACACATATCCCCGATACTCGAACGCGTGTGTCGGCGGCGGCGGCAGCGGCGGTCTGCAACCTGACCACAGCATATACATGAACAATGTCATCAACCCGCACATGAATGACCCTGACCTGAACGACTACGGCCAGGGGCTCGGAGTGACAGGACCCTCGCCGGGACCGAGCTGTTTCCCAGAAGCTCAAACCGCACAAGAAGTGGTGCCTCAGACTCAGCCCAAACGACGTCGCACAACAAATCCACAGTCCGAAGAGAACTTCCAGAGGGCACTAGAAGCTGTCCGTTTCGGCGGCATCGGTTTCTGTAAAGCGGCACGTATGTTCGGAGTAAACAATAGGACACTATGGCTCGAGTACAAGAAGAAGGGATATCCCAACAACCGGCCTAGTATTAAGAACAGGATAAAACGCGAGCACACCACCCCGCCGCCAGAACCTAAGGAAGAAGTTCAGCAACAGGATCAACAGATGGCATTAATATGCCCGCCGCATTCCGTACCAGTGGGTTTCCAAAGAGGACCTGTCCGTCTGCGATTCTTGACCAAGGGTTCTGGGAATCTGGGGGCCTCGGAAGTTGCTCACCATTCTCCCTTGAACATTCTCGGGATGAACTTTAATTCGATTCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLKAHKVVLSACSTYFQAVLVDNPSRHPIVILKDVSYSDLRTMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPESTSLTRSQGTSADFQSPGDSIDSQRHSASPAASPSNKRRRRRKSSTGSTSLNMVPEENRNDEPGQSVDLVRGDSITLSSVPQQRRMRDFQDEQIDNVQQPTDQHSLHVDQLSLDNNSAIIPQGGQWSMMEHTYPRYSNACVGGGGSGGLQPDHSIYMNNVINPHMNDPDLNDYGQGLGVTGPSPGPSCFPEAQTAQEVVPQTQPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKNRIKREHTTPPPEPKEEVQQQDQQMALICPPHSVPVGFQRGPVRLRFLTKGSGNLGASEVAHHSPLNILGMNFNSIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141781; iTF_01143928; iTF_01141594; iTF_01145360; iTF_01145219; iTF_01149524; iTF_01149705; iTF_01141023; iTF_01140860; iTF_01142335; iTF_01142489; iTF_01148032; iTF_01148191; iTF_00958044; iTF_00957882; iTF_01143037; iTF_01143202; iTF_01144479; iTF_01144650;
- 90% Identity
- iTF_01143928;
- 80% Identity
- iTF_01143928;