Ppol013059.1
Basic Information
- Insect
- Papilio polyxenes
- Gene Symbol
- lolal
- Assembly
- GCA_026167825.1
- Location
- JAOPJD010000025.1:5525424-5530734[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-16 4.3e-13 49.2 0.0 1 42 339 381 339 384 0.94
Sequence Information
- Coding Sequence
- ATGTCGCAACAGTACAGCTTGCGTTGGAATAACCATCAACCTAATTTCATATCTATGTTCACGACATTGTTGAATACACAAACCCTTGTAGATGTCACATTGGCAGCAGAAGGCAAGCATTTAAAAGCACATAAAGTGGTGTTGTCTGCTTGCAGTACTTATTTTCAGGCTGTTTTAGTTGACAATCCTTCAAGGCATCCTATTGTGATTCTTAAAGATGTCTCATATTCTGACCTTCGTACCATGGTAGACTTTATGTACTATGGTGAAGTAAATGTAACTGAGGAACAACTACCACAAGTACTTGATACAGCAAAGCTCCTAAAAATAAAAGGGCTCACAGAAATGCCAGATTCCACTTCTCTGACACGGTCCCAGGGGACGACAGCAGACTTCCAGTCCCCGGGGGATTCAATAGATTCCCAAAGACACTCAGCTTCACCAGCAGCCTCGCCTTCCAACAAACGCAGAAGACGACGAAAGAGTTCAACTGGTTCAACATCTTTGAACATGGTACCAGAAGAAAATAGAAATGATGAAGCGGGACAGTCTGTGGATTTAGTGCGGGGGGATTCAATAACTTTGAGCAGTGTTCCACAACAAAGACGCATGAGGGAATTCCAAGATGAGCAAATGGATAATGTACCACAGCCAACTGATCAGCACAACCTGCATGTGGACCAGTTGTCAATGGACAACAATCAAGCTATTATTCCACAAGGAGGCCAATGGAGTATGATGGAGCACACATACCCCCGATACTCGAACGCGTGCGTCGGCGGCGGCGGCGGTGGCGGTACCGGCACCGGCAGCGGCGGCTTGCAGCCGGACCACGGCTTATACATGAACAACGTCATCAACCCACACATGAACGACTCCGACATGAACGACTACGGTCAGGGCCTCGGAGTGACTGGGCCCTCGCCTGGGCCGAGTTGCTTCCCAGAGGCACAGACGGCGCAAGAAGTGGTGCCGCAAACCCAGCCTAAACGACGTCGCACTACCAATCCACAGTCCGAAGAGAACTTCCAAAGGGCACTCGAAGCCGTTCGTTTCGGTGGAATCGGCTTCTGTAAAGCGGCACGAATGTTTGGAGTGAACAATAGGACACTATGGCTCGAGTACAAGAAAAAGGGTTATCCCAACAACCGGCCTAGTATTAAAAACAGGATAAAACGCGAACACACTACTCCGCCGCCCGAACCAAAGGAAGAAGTTCAGCAACCGGAACAACAGATGGCACTGATATGTCCGCCGCATTCTGTACCAGTGGGTTTTATAGATTCCCGACCGATAGATTTCCCGCTGCAGGGGGTTTCCCATCATTCTCCTCTGAACATTCTCGGGATGAACTTTAATTCGATCCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLKAHKVVLSACSTYFQAVLVDNPSRHPIVILKDVSYSDLRTMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDSTSLTRSQGTTADFQSPGDSIDSQRHSASPAASPSNKRRRRRKSSTGSTSLNMVPEENRNDEAGQSVDLVRGDSITLSSVPQQRRMREFQDEQMDNVPQPTDQHNLHVDQLSMDNNQAIIPQGGQWSMMEHTYPRYSNACVGGGGGGGTGTGSGGLQPDHGLYMNNVINPHMNDSDMNDYGQGLGVTGPSPGPSCFPEAQTAQEVVPQTQPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKNRIKREHTTPPPEPKEEVQQPEQQMALICPPHSVPVGFIDSRPIDFPLQGVSHHSPLNILGMNFNSIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01143767;
- 90% Identity
- iTF_01143928;
- 80% Identity
- iTF_01148191;