Pdem003340.1
Basic Information
- Insect
- Papilio demoleus
- Gene Symbol
- lolal
- Assembly
- GCA_029286655.1
- Location
- JAGSMY010000004.1:5313048-5317045[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-16 4.5e-13 49.2 0.0 1 42 335 377 335 380 0.94
Sequence Information
- Coding Sequence
- ATGTCGCAACAATACAGCTTGCGTTGGAATAACCATCAGCCTAATTTCATTTCTATGTTCACAACTTTGTTGAATACTCAAACACTTGTAGATGTCACATTGGCAGCTGAGGGCAAGCATTTAAAAGCTCATAAAGTGGTGTTGTCAGCTTGCAGTACTTATTTTCAGGCTGTTTTAGTTGACAATCCCTCAAGGCATCCAATTGTGATTCTTAAAGATGTCTCATACTCTGACCTTCGTACCATGGTAGACTTTATGTACTATGGTGAAGTAAATGTTACTGAGGAACAACTGCCACAAGTACTTGATACAGCAAAACTCTTGAAAATTAAAGGGCTTACAGAAATGCCGGATTCCACCTCACTCACCCGGTCCCAGGGCACTTCTGCAGACTTTCAATCTCCGGGTGATTCAATAGATTCCCAAAGACATTCAGCATCACCAGTGGCTTCACCATCCAACAAACGTAGAAGACGACGAAAGAGTTCAACTGGGTCAACATCTTTAAATATGGTACCGGAAGAAAATAGAAATGATGAAGCAGGACAGTCCGTTGATTTGGTGCGAGGTGATTCAATAACTTTGAGTAGCGTGCCACAACAGCGACGTATGAGGGAGTTCCAAGATGAGCAAATGGATAATGTACCACAGCCGACTGATCAGCACAACCTCCATGTTGACCAATTGTCAATGGACAACAATCCAGCTATTATTCCACAAGGAGGCCAATGGAGTATGATGGAGCACACATATCCCCGATACTCGAACGCATGCGTcggtggcggcggcggtggAGGGAGCGGCGGCCTGCAGCCTGACCACGGCATATACATGAACAACGTCATCAACCCGCACATGAACGACTCCGACATGAACGATTACAGCCAGAGCCTAGGAGTGACTGGACCCTCGCCCGGCCCCAGCTGCTTCCCGGAGGCACAGACAGCACAAGAAGTGGTGCCCCAGACTCAGCCCAAACGACGCCGCACCACAAATCCACAATCCGAGGAGAATTTCCAAAGAGCACTGGAGGCTGTCCGTTTTGGTGGCATAGGATTCTGTAAAGCGGCACGAATGTTTGGAGTAAACAATAGGACACTATGGCTCGAATACAAAAAGAAGGGGTATCCTAATAATCGGCCAAGTATTAAGAATAGGATAAAACGCGAGCACACTACTCCACCGCCCGAACCAAAAGAGGAAGTCCAGCAACCGGAGCAACAGATGGCACTGATTTGCCCGCCGCATTCTGTACCAGTTGGTTTTATAGACTCCCGACCGATAGATTTTCCGCTGCAGGGGGTTCCGCACCACTCTCCCCTGAATATTCTCGGGATGAACTTTAACTCGATCCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLKAHKVVLSACSTYFQAVLVDNPSRHPIVILKDVSYSDLRTMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDSTSLTRSQGTSADFQSPGDSIDSQRHSASPVASPSNKRRRRRKSSTGSTSLNMVPEENRNDEAGQSVDLVRGDSITLSSVPQQRRMREFQDEQMDNVPQPTDQHNLHVDQLSMDNNPAIIPQGGQWSMMEHTYPRYSNACVGGGGGGGSGGLQPDHGIYMNNVINPHMNDSDMNDYSQSLGVTGPSPGPSCFPEAQTAQEVVPQTQPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKNRIKREHTTPPPEPKEEVQQPEQQMALICPPHSVPVGFIDSRPIDFPLQGVPHHSPLNILGMNFNSIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01143767;
- 90% Identity
- iTF_01143928;
- 80% Identity
- iTF_01141023;