Basic Information

Insect: Papilio gigon
Gene Symbol: -
Assembly: GCA_027563995.1
Location: JAODUI010000011.1:447689-451181[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.48 34 5.3 3.1 1 23 402 424 402 424 0.97

2 9 3e-06 0.00022 21.7 1.5 1 23 471 494 471 494 0.97

3 9 0.026 1.9 9.3 0.0 3 23 501 521 500 521 0.97

4 9 3.3e-06 0.00024 21.5 3.7 1 23 527 549 527 549 0.98

5 9 0.00013 0.0095 16.5 0.4 3 23 556 576 555 576 0.99

6 9 2.3e-05 0.0016 18.9 2.9 1 23 585 607 585 607 0.98

7 9 3e-06 0.00022 21.7 0.8 1 23 613 636 613 636 0.94

8 9 0.021 1.5 9.6 0.6 1 23 642 665 642 665 0.81

9 9 0.034 2.5 8.9 2.4 1 23 673 696 673 696 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.48	34	5.3	3.1	1	23	402	424	402	424	0.97
2	9	3e-06	0.00022	21.7	1.5	1	23	471	494	471	494	0.97
3	9	0.026	1.9	9.3	0.0	3	23	501	521	500	521	0.97
4	9	3.3e-06	0.00024	21.5	3.7	1	23	527	549	527	549	0.98
5	9	0.00013	0.0095	16.5	0.4	3	23	556	576	555	576	0.99
6	9	2.3e-05	0.0016	18.9	2.9	1	23	585	607	585	607	0.98
7	9	3e-06	0.00022	21.7	0.8	1	23	613	636	613	636	0.94
8	9	0.021	1.5	9.6	0.6	1	23	642	665	642	665	0.81
9	9	0.034	2.5	8.9	2.4	1	23	673	696	673	696	0.96

Sequence Information

Coding Sequence: ATGTTGCACAACAGCGGTCCCTTTGGACCGAACGAAGTGCCTATCAACATGGGCGCGCCAGTAAACATGACCCCGATGAGTGGTACAATGAACATTACCAATAACATAAATAATCTGGCCAAAATTGGGCAGCAGTCGTCGGAAACGCCTAATGCGCATTACCCGGTACCAAGCTATCCAACATACGGGCATCCGCATTTGAACATGAACCCAACAATGAGCCCATTTCCAAGTTATCCTCCTATTGGCTTTCAATCGAGTTATCTATCGCAGACTCCTTCGTCAGTTCACGACACGAATTGGCAGAATGGTATGTTACCTATGGGTTTGAACATGCAAAACGATAATGGTTCACTTAATTATTCTTCGTCTTCAATAAAACGACCCGACGCTATGAGTGAGTACAAGGATCACAATTTACACAGCAAAATGTCTTTGCACATTCCACAGGTACACACTAAAGCATTCCATAAACATGTCAACATGGAAAACAACCATTACAATCATTATCAGCATTACAGTCCTAAACCAAGCACCTTCAGACAGTTTGCTGACTGTAATCTAGATTTAAGCACAAAATCTAAACTGGAAATTGACCCAAGACGAAAAAGCTTGGAGACAACTGTCAAACTTATCGAGAACATCCTTATAAACAGTACCAGAAAGAATGAGACAGTGCAACCTATGATAACTGATGATATATTCACAAACCCTAAGCCCTCAAGTCCTATTCCATCTCCTTCAACTGATGATATTCGTAAAACCCCCGAGAAAGATGTAGTTGAAGACCGAAACATACAAGAAGTTGATAAAGAAGATACTGAACGACAAGAAGACACAATTGATTCACAAGATGATGAAAGTACTTCTAATTCATTGGTCTGCAGAGAGGACACGTTACCAGAGTCTCAAACCTCAATTAATGAAGAACCAACATCATCGGATACAGAGAGTGAAGCGCAGCCAGAAGATCTCACCTCAACAGCCCCTAGTGCAGTTGAGAATCAACATATGGCCATAGACACGAAGGTAGAGGTGAAAGTAGAAGAAACGGTGTGGGTAGATGCAGAACTGAGCCCATTTCATAAGGATATTCATGGTATGCGAAGAGAAGATGTGGAAGATACCAATATAGTTGCAAGTGACAGGAGTGTAGAAGAGGCAATGGAAGTTATAAAAAACGGAATGAATGTAGAGGCTCATTATGAATGTCCAAGTTGCAGTCTATTATTCAACCATCCAAAAAGGTTCCTGATTCACCACAAATGGCATTCATTCGGTCTCAGTACAATGAAGAAGTTAGACTTGGCAAGAGAAAAGGAGATGAAGAAAACTTTGAGAAGAGAAGCTAGAGTCATACAGCGGATGAACATGAACGAAGTCACCGATATGAGTTCTGTGGGCAAGAAGTATTCCTGCAAGGACTGTGATAAAGTCTTCAGCGCTAGAGGCAGCTTGAAAAACCATAGACAACGGTACCATCCGACGCGGGTTCGTGACTGCAAGATCTGTGGTAAAACAGTGTTGGGTTGGATAGCACTGCGCGCACACTTGACAACCCACACAACGGACTCCGGCTACCAGTGCAGCGACTGTCCTAAACGGTTCAAGTACTCGCACTCCCTGGCTAAACATAGAGACACTCATTTGGAGAAAACTCACGGCTGTGAGCAGTGCCCGAAGATGTTTGGTTCCGTGAAGCTGCTGAAGATGCACATGAAGACGCACGAGCGCGTGCTCCGCGGGACCACCTTCCACTGCACCTACTGCGGGAAGGGCTTCTTTGAGTCTTACAGCTTGCAGGTGCACGAGCGCACGCACCGGAACGAGCGGCCCTTCCTCTGCGAGATCTGCAACACGAGCTTCGGCACCAACTCCAGCCTCAAGAGACATTTGAAAGTGTCTCACAACGCTGCGAAGCCGTTCGAGTGTCCGACGTGCCACCGCTCGTTCGTGTCGGCGGTGATCCGCGAGCGCCACGAGCAGCGCGTGCACGGCGACCCCAACAGCTTCAAGTTCCCCTGCAACCAGTGCCCCTGCAGATATTTGAAGGCGAAAGATTTAAGAAAGCACATGTACAAAGCTCATCCCAAAGGCAAACGGAAGAGGAAAATGCACAGCGACAGCGAATAG
Protein Sequence: MLHNSGPFGPNEVPINMGAPVNMTPMSGTMNITNNINNLAKIGQQSSETPNAHYPVPSYPTYGHPHLNMNPTMSPFPSYPPIGFQSSYLSQTPSSVHDTNWQNGMLPMGLNMQNDNGSLNYSSSSIKRPDAMSEYKDHNLHSKMSLHIPQVHTKAFHKHVNMENNHYNHYQHYSPKPSTFRQFADCNLDLSTKSKLEIDPRRKSLETTVKLIENILINSTRKNETVQPMITDDIFTNPKPSSPIPSPSTDDIRKTPEKDVVEDRNIQEVDKEDTERQEDTIDSQDDESTSNSLVCREDTLPESQTSINEEPTSSDTESEAQPEDLTSTAPSAVENQHMAIDTKVEVKVEETVWVDAELSPFHKDIHGMRREDVEDTNIVASDRSVEEAMEVIKNGMNVEAHYECPSCSLLFNHPKRFLIHHKWHSFGLSTMKKLDLAREKEMKKTLRREARVIQRMNMNEVTDMSSVGKKYSCKDCDKVFSARGSLKNHRQRYHPTRVRDCKICGKTVLGWIALRAHLTTHTTDSGYQCSDCPKRFKYSHSLAKHRDTHLEKTHGCEQCPKMFGSVKLLKMHMKTHERVLRGTTFHCTYCGKGFFESYSLQVHERTHRNERPFLCEICNTSFGTNSSLKRHLKVSHNAAKPFECPTCHRSFVSAVIRERHEQRVHGDPNSFKFPCNQCPCRYLKAKDLRKHMYKAHPKGKRKRKMHSDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01140401; iTF_01149823; iTF_01144800; iTF_01139163; iTF_01141127; iTF_01143325; iTF_01141896; iTF_01147583; iTF_01149028; iTF_01145453;
90% Identity: -
80% Identity: -