Basic Information

Insect: Papilio xuthus
Gene Symbol: -
Assembly: GCA_000836235.1
Location: NW:6141929-6155591[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.083 4.8 7.6 3.7 1 23 400 422 400 422 0.98

2 9 2.7e-06 0.00016 21.7 1.5 1 23 469 492 469 492 0.97

3 9 0.024 1.4 9.3 0.0 3 23 499 519 498 519 0.97

4 9 3e-06 0.00017 21.5 3.7 1 23 525 547 525 547 0.98

5 9 0.00012 0.0068 16.5 0.4 3 23 554 574 553 574 0.99

6 9 2.1e-05 0.0012 18.9 2.9 1 23 583 605 583 605 0.98

7 9 2.7e-06 0.00016 21.7 0.8 1 23 611 634 611 634 0.94

8 9 0.012 0.69 10.2 0.7 1 23 640 663 640 663 0.85

9 9 0.031 1.8 8.9 2.4 1 23 671 694 671 694 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.083	4.8	7.6	3.7	1	23	400	422	400	422	0.98
2	9	2.7e-06	0.00016	21.7	1.5	1	23	469	492	469	492	0.97
3	9	0.024	1.4	9.3	0.0	3	23	499	519	498	519	0.97
4	9	3e-06	0.00017	21.5	3.7	1	23	525	547	525	547	0.98
5	9	0.00012	0.0068	16.5	0.4	3	23	554	574	553	574	0.99
6	9	2.1e-05	0.0012	18.9	2.9	1	23	583	605	583	605	0.98
7	9	2.7e-06	0.00016	21.7	0.8	1	23	611	634	611	634	0.94
8	9	0.012	0.69	10.2	0.7	1	23	640	663	640	663	0.85
9	9	0.031	1.8	8.9	2.4	1	23	671	694	671	694	0.96

Sequence Information

Coding Sequence: ATGTTGCACAACAGCGGTCCCTATGGACCAAACGAAGTGCCGATCAACATGGGCGCGCCAGTAAACATGACCCCGATGAGTGGTACAATGAACATTagcaataacataaataatcttTCTAAAATCGGGCAGCAATCGACGGAAACTTCTAATGCGCATTACCCTGTACCGAACTATCCGACATATGGGCATccacatttaaatatgaaccCGGCAATGAGCCCGTTTCCAAATTATCCTCCAATTGGCTTTCAATCAAACTATTTTTCGCAGAGTTCTTCGTCAGTTCACGATACAAATTGGCAGAATGGTATGTTACCTATGGGTTTAAACATGCAAAATGATAACGgtacaattaattattcttcATCTTCTATGAAACGACCTGACAATATGAGTGAGTACAAAGAACATAATTTCAACAGCAAAATGTCTTTGCACATTCCGCAGGTGCACACCAAAGCATTCCATAAACATCTTAATATGGAAAACAACCATTATAATCACTACAACCATTACAGCCCTAGTCCAAGCAACTATAGACAGTATGCGGACTGTAATCTAGATTTAAGCACAAAATCTAAAATGGAAATTGATCCAAGACGAAAAAGCTTGGAAACAACTGTTAAACTAATAGAAAATATCCTTATAAACAGCACGAGAAAGAATGATACAGTTGAAACTAAAATTACCGAAGATATATATACAAACCCTAAACCCACAAGTCCCGTTCAATCCCATTCAAATGATAGCCTAAAAACATCTCAGAAGAATATAATTGAAAACCAAAGCATGAAAGAAGTAGATGAAGTAGATAGCAGACAACATGCTACAATTGATACAAGAGATGATGATAGCACATCTAATTCATTGCTTTGTAAAGAAGATACATTACCCGAGTCCCAAACCTCAACAATTGAAGAACAAACATCATCAGATGAGGAGAGTGAACCGCAGCCAGAAGATCTTACTTCAACAGCCATTAGTGCAgtagagaaagaaaatatgacAATAAATACTAGAGTTGAGGTTAAAGTGGAGGAAACTGGATGGGTAGATACAGAATCTAATCCATTTCAAAAGGATGTTCACGGCTTACGAAGGGAAGATGTGGATAATGCCAACATAATAGCAAGTGATAAAAGTGTAGAAGTGGCAacagatgttataaaaaatggATTAGATGAAGAGAAACATTACGAATGTCCAAATTGTAGTCTACTCTTCAAGCATCCAAAAAGATTTCTCATTCATCACAAATGGCATTCATTCGGTCTCAGCACAATGAAGAAGTTGGATATGGCAAGAGAGAAGGagatgaaaaaatctttaagaaGAGAAGCAAGAGTTATACAAAGAATGAATATGAACGAAGTTACGGATATGAGTGCTGTGGGAAAAAAGTATTCATGCAAGGACTGTGATAAAGTTTTCAGTGCTAGAGGCAGTTTGAAGAACCATAGACAAAGGTATCATCCAACAAGAGTTCGGGACTGCAAGATCTGTGGTAAAACAGTCTTAGGCTGGATAGCTCTGCGAGCCCACTTGACCACTCATACAACGGACTCTGGCTACCAGTGTAGTGATTGTCCTAAACGATTCAAGTATTCACATTCACTGGCAAAGCATAGAGATACACATTTGGAGAAAACACACGGCTGTGAACAATGTCCGAAGATGTTTGGATCGGTGAAGCTTCTGAAGATGCATATGAAGACTCACGAACGTGTGCTCAGAGGGACCACCTTCCACTGCACATACTGCGGGAAGGGCTTCTTTGAGTCTTACAGTTTGCAGGTGCACGAGCGCACACACAGGAACGAGCGGCCATTCCTTTGTGAAATTTGCAACACCAGCTTCGGTACTAACTCCAGTCTTAAGAGACATTTGAAAGTGTCTCACAATTCAGCGAAACCATTCGAGTGTCCTACATGCCATCGATCATTTGTGTCTGCGGAGATCCGAGAGCGTCATGAGCAGCGCGTGCATGGTGACCCTGACAGCTTCAAGTTCCCCTGCAACCAGTGTCCATGCAGATACTTGAAAGCGAAAGATTTAAGAAAACACATGTACAAAGCTCATCCGAAAGGCAAACGGAAGAGGAAAATGCACAGCGACAGTGAATAG
Protein Sequence: MLHNSGPYGPNEVPINMGAPVNMTPMSGTMNISNNINNLSKIGQQSTETSNAHYPVPNYPTYGHPHLNMNPAMSPFPNYPPIGFQSNYFSQSSSSVHDTNWQNGMLPMGLNMQNDNGTINYSSSSMKRPDNMSEYKEHNFNSKMSLHIPQVHTKAFHKHLNMENNHYNHYNHYSPSPSNYRQYADCNLDLSTKSKMEIDPRRKSLETTVKLIENILINSTRKNDTVETKITEDIYTNPKPTSPVQSHSNDSLKTSQKNIIENQSMKEVDEVDSRQHATIDTRDDDSTSNSLLCKEDTLPESQTSTIEEQTSSDEESEPQPEDLTSTAISAVEKENMTINTRVEVKVEETGWVDTESNPFQKDVHGLRREDVDNANIIASDKSVEVATDVIKNGLDEEKHYECPNCSLLFKHPKRFLIHHKWHSFGLSTMKKLDMAREKEMKKSLRREARVIQRMNMNEVTDMSAVGKKYSCKDCDKVFSARGSLKNHRQRYHPTRVRDCKICGKTVLGWIALRAHLTTHTTDSGYQCSDCPKRFKYSHSLAKHRDTHLEKTHGCEQCPKMFGSVKLLKMHMKTHERVLRGTTFHCTYCGKGFFESYSLQVHERTHRNERPFLCEICNTSFGTNSSLKRHLKVSHNSAKPFECPTCHRSFVSAEIRERHEQRVHGDPDSFKFPCNQCPCRYLKAKDLRKHMYKAHPKGKRKRKMHSDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01142602;
90% Identity: -
80% Identity: -