Basic Information

Insect: Papilio glaucus
Gene Symbol: -
Assembly: None
Location: scaffold:37844-43483[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.038 2.3 8.6 1.7 1 23 403 425 403 425 0.98

2 9 2.8e-06 0.00017 21.7 1.5 1 23 472 495 472 495 0.97

3 9 0.024 1.5 9.3 0.0 3 23 502 522 501 522 0.97

4 9 3e-06 0.00019 21.5 3.7 1 23 528 550 528 550 0.98

5 9 0.00012 0.0074 16.5 0.4 3 23 557 577 556 577 0.99

6 9 2.1e-05 0.0013 18.9 2.9 1 23 586 608 586 608 0.98

7 9 2.8e-06 0.00017 21.7 0.8 1 23 614 637 614 637 0.94

8 9 0.032 1.9 8.9 0.7 1 22 643 664 643 666 0.76

9 9 0.031 1.9 8.9 2.4 1 23 674 697 674 697 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.038	2.3	8.6	1.7	1	23	403	425	403	425	0.98
2	9	2.8e-06	0.00017	21.7	1.5	1	23	472	495	472	495	0.97
3	9	0.024	1.5	9.3	0.0	3	23	502	522	501	522	0.97
4	9	3e-06	0.00019	21.5	3.7	1	23	528	550	528	550	0.98
5	9	0.00012	0.0074	16.5	0.4	3	23	557	577	556	577	0.99
6	9	2.1e-05	0.0013	18.9	2.9	1	23	586	608	586	608	0.98
7	9	2.8e-06	0.00017	21.7	0.8	1	23	614	637	614	637	0.94
8	9	0.032	1.9	8.9	0.7	1	22	643	664	643	666	0.76
9	9	0.031	1.9	8.9	2.4	1	23	674	697	674	697	0.96

Sequence Information

Coding Sequence: ATGTTGCACAACAGCGGTCCTTTTGGACCGAACGAAGTGCCGATCAACATGGGCGCGCCAGTAAACATGACCCCGATGAGTGGTGCAGTGAACATTTCCAATAACATAAATAATTTGTCCAAAATCGGCCAGCAGCCGACGGAAACTTCTACCGCACATTACCCTGTACCGAGCTACCCGACTTACGGGCATCCACATTTGAACATGAATCCAGCAATGAGTCCTTTCCCAAGTTATCCCCCTATTGGCTTTCAATCGAGTTATATATCGCAGAGTCCTTCGTCAGTTCACGAATCAAATTGGCAGAATGGTATGTTACCCATTGGTCTGAACATGCAAAATGATAATGGTACACTTAATTATTCATCATCTGCAATGAAACGACCTGATCCTATGAGTGAGTACAAAGAGCATACTTTTAACAACAAAATGCCTTTGCACATTCCGCAAGTGCATACTAAAGCTTTCCATAAACATCTCAGCATGGAAAATAACCATTATAATCATTATCAGCATTATAGCCCTAATCCAAGTACCTTTAGACAATATGCTGACTGTAATCTAGATTTAAGCACAAAATCTAAAACGGAAATGGATCCAAGACGTAAAAGCTTAGAGACAACTGTTAAACTAATTGAGAATATCCTCATTAACAGTACTAGAAAGACTGACACTGTTCCGTCTAAAGTAACCGAAGAAATTTATACAAACTCTAAACCACCAAGTCCCATTCAGTCATGTTCTAATAATGATGATCTTCTCAAAACAACTTCTGAAATTTACATAGATGAAAATCAAACCAGCCAAGAAGTAGATAAAACAGATAGCAGACCAAATGAAAATACAATTGAAGATGAAAATACTTCTGACTCATTGATTGAAAAAGAAGATCTAATACCTCAGTCTTCTAAAGCCTTAATGGATGAAGAACAAGTCTCCTCAGATGCAGAGAGTGAACCAAAGGCAGAAGATCTTACATCTACAGCTCCTAGTACAGTAGAGAAACAGGATATAATCCTAGACACCAGAGTTGAGGTTAAAGTGGAGGAAACGGGGTGGGTAGACACGGAAATGTTTAATCCATTCCAAAGGGATGTAAATGGCATACCAACTGAAGATGCTGTAAACGCCAACATAGTAGGCAGTGATAAGAGTGTGGAAGAAGCAACCGAAGTTATAAAAAATGGTTCACAGGAAGAGAAACATTATGAATGTCCGAACTGCAGTCTGCTTTTCAACCACCCCAAGAGATTCCTCATTCACTACAAATGGCATTCGTTTGGTCTTAGTACAATGAAGAAGTTGGATATGGCAAGAGAAAAGGAGATGAAAAAGACTATGAGAAGAGAAGCAAGAGTCATACAGAGGATGAACATGAACGAAGTGACAGACATGAATGCTGCAGGGAAGAAATATTCGTGCAAGGACTGTGATAAAGTCTTCAGTGCTAGAGGAAGTTTGAAGAATCATCGGCAAAGATACCATCCTACACGTGTCCGTGACTGCAAGATCTGCGGCAAGACGGTCCTGGGCTGGATCGCACTGCGAGCGCACTTGACCACGCACACCACCGACTCGGGCTACCAGTGTAGTGACTGTCCCAAACGATTCAAGTATTCACATTCGCTGGCTAAGCATCGAGATACTCATTTGGAAAAAACTCATGGCTGCGAACAATGTCCAAAGATGTTTGGTTCGGTGAAACTGCTGAAAATGCATATGAAGACGCACGAGCGAGTTCTCAGAGGCACCACCTTCCACTGCACCTACTGCGGGAAGGGATTCTTCGAATCTTACAGTTTGCAGGTACACGAGCGCACCCACAGGAACGAGCGGCCGTTCCTGTGCGAAATCTGCAACACAAGCTTCGGTACCAACTCCAGTCTGAAGAGGCATTTGAAAGTGTCTCACAACTCAGCAAAGCCGTTCGAATGTCCCACGTGCCACCGGTCCTTCGTGTCGGAGGTGATCCGCGAGCGACACGAGCAGCGCGTGCACGGCGACCCCGACAGCTTCAAGTTCCCCTGCAACCAGTGCCCCTGCAGGTACCTGAAAGCTAAAGACTTAAGAAAGCACATGTACAAAGCTCATCCGAAGGGCAAACGAAAGAGGAAAATTCACAGCGACAGCGAGTAG
Protein Sequence: MLHNSGPFGPNEVPINMGAPVNMTPMSGAVNISNNINNLSKIGQQPTETSTAHYPVPSYPTYGHPHLNMNPAMSPFPSYPPIGFQSSYISQSPSSVHESNWQNGMLPIGLNMQNDNGTLNYSSSAMKRPDPMSEYKEHTFNNKMPLHIPQVHTKAFHKHLSMENNHYNHYQHYSPNPSTFRQYADCNLDLSTKSKTEMDPRRKSLETTVKLIENILINSTRKTDTVPSKVTEEIYTNSKPPSPIQSCSNNDDLLKTTSEIYIDENQTSQEVDKTDSRPNENTIEDENTSDSLIEKEDLIPQSSKALMDEEQVSSDAESEPKAEDLTSTAPSTVEKQDIILDTRVEVKVEETGWVDTEMFNPFQRDVNGIPTEDAVNANIVGSDKSVEEATEVIKNGSQEEKHYECPNCSLLFNHPKRFLIHYKWHSFGLSTMKKLDMAREKEMKKTMRREARVIQRMNMNEVTDMNAAGKKYSCKDCDKVFSARGSLKNHRQRYHPTRVRDCKICGKTVLGWIALRAHLTTHTTDSGYQCSDCPKRFKYSHSLAKHRDTHLEKTHGCEQCPKMFGSVKLLKMHMKTHERVLRGTTFHCTYCGKGFFESYSLQVHERTHRNERPFLCEICNTSFGTNSSLKRHLKVSHNSAKPFECPTCHRSFVSEVIRERHEQRVHGDPDSFKFPCNQCPCRYLKAKDLRKHMYKAHPKGKRKRKIHSDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01142602;
90% Identity: iTF_01141896;
80% Identity: -