Pgig014328.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- -
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000027.1:2566614-2574659[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0065 0.47 11.2 1.1 2 23 210 232 209 232 0.92 2 23 0.22 16 6.3 0.3 1 22 624 645 624 645 0.95 3 23 4.4 3.1e+02 2.3 0.3 1 22 687 708 687 710 0.82 4 23 0.0042 0.3 11.8 0.6 2 21 720 739 719 740 0.94 5 23 0.43 31 5.4 0.3 2 23 748 770 747 770 0.89 6 23 0.007 0.5 11.1 0.1 3 23 791 812 789 812 0.96 7 23 0.0042 0.3 11.8 2.5 1 23 818 841 818 841 0.95 8 23 0.081 5.9 7.7 0.0 1 23 867 890 867 890 0.90 9 23 0.0036 0.26 12.0 3.5 1 23 895 917 895 917 0.97 10 23 0.0046 0.33 11.6 0.3 1 23 923 946 923 946 0.95 11 23 0.0015 0.11 13.2 1.3 1 23 960 982 960 982 0.97 12 23 0.00012 0.0083 16.7 1.8 1 23 1031 1054 1031 1054 0.97 13 23 0.0031 0.22 12.2 1.7 1 23 1117 1140 1117 1140 0.96 14 23 0.00072 0.052 14.2 2.1 2 23 1164 1186 1163 1186 0.95 15 23 0.056 4.1 8.2 0.1 2 23 1192 1214 1191 1214 0.93 16 23 0.0056 0.41 11.4 0.2 1 21 1257 1277 1257 1278 0.95 17 23 0.00027 0.02 15.5 1.0 1 23 1288 1310 1288 1310 0.93 18 23 5.7e-05 0.0041 17.6 0.3 2 23 1402 1424 1402 1424 0.93 19 23 4e-07 2.9e-05 24.4 1.1 3 23 1431 1451 1430 1451 0.98 20 23 0.0016 0.11 13.1 0.1 3 23 1472 1492 1470 1493 0.94 21 23 0.078 5.6 7.8 0.0 1 23 1513 1535 1513 1535 0.97 22 23 0.0036 0.26 12.0 0.4 1 23 1541 1564 1541 1564 0.96 23 23 0.00017 0.012 16.2 0.4 1 23 1572 1595 1572 1595 0.96
Sequence Information
- Coding Sequence
- ATGCGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGGCCTCGCATCAAAAATCAGGGATTGTGTATCTGTAGAGATAAACGAAGATGACGACCTGCCAACTAATGTTTGCAGAAAATGCTGTGACAATGTCAATAACTGGCACATTTTTAAGGATGTATGTGAAAGGTCACAAAACAAACTACAGACACTAATTAAAAATGATGGCAGCCAACTAGAAGAGGTGCAAATTAAAAGTGAACCTTTCTCTGATGAGGCTTATGATGATGGAGTGGTCATTGAAGGGTCATACCCTGACCTTGAGTGTGCGTCCACATCAAGTAAAGTACAACCAGAAGGGCCTCCTATCTTGGCTTCGCTGGGTCTCACACCGAGGAGTGATAAGGGTATGGAGAGTGAAAATAATGAAGATGACGATGAAGAAATGAACGAAGAAGAGATGAATGAGTCCAGCCAACAATATCCAAGCATGCCGGCTATGCCCGAGGTCTCCATCACTGTGATGCGGCCCACGGGCGAGACGCTGCACGCCCGCCAGGGGATACAACAACTCGCTTCGAAGGAGTGCCTCGTGTGCGGCCGCTCCTACAGATACTCACACAACGCGCGGCGACATGAACTCAACGCTCACAGCTTCGACAGATACACCAACAAAGTAACCGCCAAGAAATCTCACAACGCACACATGCAGCCGAAATTTAGACCCAATCCATTCAATCCCAAAGCGAGGCTCATGCCCAACCCCATTAGTCATAAGATGCAGTTGATCCCTAAAGGGATTAATGCGAAAATTATACAGAATAAGTCTCTCGCCCCACCAAAACCTATACCAGTTAAAACACCAAAGGGAACCCAAAATAATTTGCCATACCCGCTTCGTATTAAGGCATTAAAAGACTTGCAGATAAAGAAGAAGGAACCTCAGATTCTTAAGACTCTCCTGACAACTAAACCCGAAGTTCTGGTATCGGAACCGGAAATCCTTAATTCTGGTCCGGAAAGCCCCGAGACTTTGATATCTGAACCAGAAATAGCTTCGTTTCAGGTAGAGACTATCCTCTCAGAACCGGATACTTATATTCACCAAGACGACGAAGATGTCGATGGTGATGTGCCAAATAACCAGGGTCAAAATTACGATACTGTAGACATGGATTCCGAAAATGAGATTGAAATAGCTCGGCAAAAAGAAAACGCCGTTGAAGGCGAAGGTGATGGCGATGGTGATGGCAGTAGCGGTGATCATCTCGTCATTAACGAAGGGGAGGATGTCAACGACATGGATAATGATGATGAAAATAATATGGAACGAAATCAAAGTGACAATGAAAATGACCACGTAGATGACAATGGCGATAGTCAAGACGGGTTACAGGTCGGCAACGAGAACGACGTCAGAGATGAAGATGAAGAGAATGAACATGAAACCAAAGAAGGCGATGAAGGAAATGATGATCGAGATGATGAACAGATGGAGTACAATCCGGACGATGATGATGACGAGCTGCCTCCAATTGCACCCGTCGTCGAAATCAACGAAGACATGCAAACAAACTCGTACAACAGCGAAGGCAATGATGACGATCTCGATGAAACGGCCGACCCCAACGACACAGCAGAGGACGTCAAAGAACTCGACCCCGACAAGCTTTATGTGACAAAGACGCAGAGAGATTTTATACTCAAATATCGCGACATCATCGAACAGATCAATACTAAAAGATGTCTGTGCTGTGACAGGGAACATCCCCGCCGCAAAGCTGTCATACAACATTTGCAGAAAAATGGACACAAAGTGCCCAAACACACGTGCTACAACTGCGTCGTCACGTTCGGCCACATCGGCGCTCTGCTCAGCCACATGCGCTCCAACACTTGCACGGATCTGTGGAAGATTATTTACAATGAAAATGGCATCACCGAAGATTTAGTTCTAGAGGATGAACCGAAAGATACCAAAGTAGCATATAAAGATATATTTAATGCTAGGTCTTACGCTTGCAAATTGTGTCCGGCTAAATTCCAATTGAAGCAATTTATAATGAAGCACGTCCTAGACGTGCACGAGGACGGCCAGTCCCGCGTGCAGCTCGTCTGTGTTCACTGCAACTCGAGATTTAAAGATAAGGCATTGTGGAAGAGGCACATCCGCAACGGAGAATGTACCGTTTATATCTCATGCGATTTGTGTTCCGAAAGATTTGGCAACATGCAACATTTCAACGACCACGCATTAGCCGTACACGCGGGTAACTTCGACCAATCTGATAATCAGAACAAATGCGTCGACGGGCGACCGACAGATTGTCCAGTTTGCGGGAAAAAGAACAGTAGCTATCCAAATTTGGTTAAACATTTAAAAATTATTCACAACGAGGAGAAACCTCACTACTGCCAGCACTGCGAGTCTAAATTTGAACAAGCTGCTGATCTGAACAAACACATCTACATGGAGCATTCTGATCGGACGTTAGGCGTGCACAGCTCCGAGCCCGACATGTCTCTCGTGAAGGAGGAAGCCGAGGAGTACCACTACTCCTGCACAGAATGTAACGCCATATTCGAAACTGTCGACGCTTGGACGGATCATCAGGTGGCCGAACACAATCAAGTCGCGCACCACTGCGACCAATGCGACAAGAAGTTCTTAAGGCCGTCGGAACTGGCGGAGCACAAGAATACGCATTTGAGAGTCAAATTTTATCCCTGCAATATTTGCTCCAATTCGTACAGCACGCCGCAAAAACTTTCTGAACATGTTCAGCAAAACCATCCCGGAGCCGCGGGCACGTACATGCCCATGGACTATGACTTCTTCTGTGACATCTGTATCAGGTCATTCAAAAGCCGCCAGGCCTACTCGAACCACATGCGCATTCACGCTAAAGTGCCCACAACCAATAGAAAACCCGGAGAGCCGAAAGGATTCGCTCCACAAATTGTCGGTAAACCGATCAGATCCTTCTCGATGGTACAACCTAATTTTCTTTCTTTCAAACCTAACTGTAACGTTCCGAACGCACCTTATTCCTGTGACATCTGCGGCAAAGGTTTTATGCACAAGAAGAATATTTGGAAGCACAAGAAAGTGCTGCACGCGGACGCCGCGGACAGGAACGACAGCGAGGAAAACACCATGCAGGCCTCCACCGAAGAGGACGAATACAACTTAGATGAAAACGGCGCCGTACTTTCGACGCCTCAATTCAATAGCTTTAATTTTACTAATTTAGCAAACAACTTGCAGCAACAGGCCGCGCAGCCCCCCCAGGATGCCACACCTTATTCCTGCGAATTATGTTTCAAACGGTTTCCCCTTAGAACAAGTTTATGGAAACACAAACGCGCCAAGCACGGAATCATTAACGCCAGCGCCAGCGGCACCTCAGATTCACCGATCATGGCGGGAGAAGGCGGCAGGTCGAGCTGCACCATTTGTAAAATTACTTTTTCAGACAAAAAATCGTACTACCGTCACAGAAAGAATGTTCACAAGTCTTCGGCGCAAATGTGCAAAATATGCGGCAAACCACTGAATTCAACGTTAGAATTGTATGAGCATCTCAAGGCTGCCCACGCCAGAGAGTTACTTGTATATAACGCGAGTCAAGGCCCCACTAAACAGGAGGTTACCCAGGAATTGGAGGGGGAATATGACGGTGACCAGGATTCGGTCGACCCCAGTGCGGAATATCAAGCCCGTTACCCGTGTGACAACTGTGGTAAACAATTCGTCGGGTTGCTCGCGTTACAGAATCACCAATGCATAAACCAACTACAATCACCTCCTCAAACTTTCGACTGTGAAATATGCCACAAAAGTTACACCTCTATATCCGCGCTAAAGAGCCACCGCGGCTGGCATTTGCGTTCCCCGGACGGCAAAGCGGCTGCCAACAATTCGGGCCTGTGGATGCCTCAGCACAAGGTCACCAGCAAGGTCAGTAAGCACGAGGTGGTCGACCCGTCGCAGCTCGCGCGCGTCACTCACTCGGCGCCGACGCCCGCCAGTGTCGCGAAGAGGAGGCTACCGCCGGAGGTCGAGGTCACCGTCGTAAATCCTAATAAGAAATTGCGTTCCGACGACTCGGTGGAATTGGAACAACAGAACAACTCTTCAACCGGAGCCGACGACAGATACTGCAACATATGCGACAAAGAGTTCACCAAACGTGCGGCCTACCAGCGACACATGGACGAAGTCCACCAGCCGAATTCCGTGTTTTGTCCCGTCTGTGAGAAGAGTTTCACTCGCAAATCGACGTTGATAGTCCACATGAAGAAACACTACGGCGGCGGCGAGGGCAGCTCGGCGACCGCGGACCAAAACGAAGATGATAATCTGGCTTGTGACATTTGTGGGGCGCAGTACGATAACGAGAGTGCGCTGCGAGCCCACCGAGCCATGCACCACGGCGATGATTCAGGAGAGTCGGAGGACGATGGCAGCAGCGCGCCGCCTCCGGGCGAATTCACGTGCGGGCAGTGCGGGGACGGCGTGGCGACACCGCGCGACCTGATCGCCCACCGCACCATGCACGCCACGCACACCAAGTTCTACTGCAACATCTGCAAGGTGTACTTCGCGCGTGCCATCGACCTGTCGTCGCACACGCGCGCGCGGCACTCCGACAACGAGAAGGTGTTCTTCCCGTGCGCGATGTGCGACAGGTTCTACATGAACAAGAAGAGTTTGCAGCGGCACATCGAGATGGCGCACTGA
- Protein Sequence
- MRVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPGLASKIRDCVSVEINEDDDLPTNVCRKCCDNVNNWHIFKDVCERSQNKLQTLIKNDGSQLEEVQIKSEPFSDEAYDDGVVIEGSYPDLECASTSSKVQPEGPPILASLGLTPRSDKGMESENNEDDDEEMNEEEMNESSQQYPSMPAMPEVSITVMRPTGETLHARQGIQQLASKECLVCGRSYRYSHNARRHELNAHSFDRYTNKVTAKKSHNAHMQPKFRPNPFNPKARLMPNPISHKMQLIPKGINAKIIQNKSLAPPKPIPVKTPKGTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILSEPDTYIHQDDEDVDGDVPNNQGQNYDTVDMDSENEIEIARQKENAVEGEGDGDGDGSSGDHLVINEGEDVNDMDNDDENNMERNQSDNENDHVDDNGDSQDGLQVGNENDVRDEDEENEHETKEGDEGNDDRDDEQMEYNPDDDDDELPPIAPVVEINEDMQTNSYNSEGNDDDLDETADPNDTAEDVKELDPDKLYVTKTQRDFILKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITEDLVLEDEPKDTKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKALWKRHIRNGECTVYISCDLCSERFGNMQHFNDHALAVHAGNFDQSDNQNKCVDGRPTDCPVCGKKNSSYPNLVKHLKIIHNEEKPHYCQHCESKFEQAADLNKHIYMEHSDRTLGVHSSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQNHPGAAGTYMPMDYDFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIVGKPIRSFSMVQPNFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADAADRNDSEENTMQASTEEDEYNLDENGAVLSTPQFNSFNFTNLANNLQQQAAQPPQDATPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGTSDSPIMAGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLNSTLELYEHLKAAHARELLVYNASQGPTKQEVTQELEGEYDGDQDSVDPSAEYQARYPCDNCGKQFVGLLALQNHQCINQLQSPPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVTHSAPTPASVAKRRLPPEVEVTVVNPNKKLRSDDSVELEQQNNSSTGADDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLIVHMKKHYGGGEGSSATADQNEDDNLACDICGAQYDNESALRAHRAMHHGDDSGESEDDGSSAPPPGEFTCGQCGDGVATPRDLIAHRTMHATHTKFYCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141080;
- 90% Identity
- iTF_01140354;
- 80% Identity
- -