Pcly017181.1
Basic Information
- Insect
- Papilio clytia
- Gene Symbol
- -
- Assembly
- GCA_018247735.1
- Location
- DWGS01013050.1:4371-4868[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-15 1.7e-11 45.1 0.3 1 40 15 55 15 58 0.88
Sequence Information
- Coding Sequence
- ATGGTCCGTAAGTACGAAAGAATGAGCGGCCGTCAGTCCTGGAGCGAGGAGGACATGGCAAAAGCCGTCGCCGCTGTCGTCTCGGGCAAAATGGGttataaactagcggccagAACCTACCACATACCGCGCTCAACTCTCCAGCGCCGCGCCAGTAAGATACGGTACCAGCTGCCGGACGAGCCGAAGCCCCTGATGGGACACTACAGACGCGTGTTCACCGACAACCAGGAGAAAGACCTCGTTGGCTACATTAAAAGTATGGAAAAGTTTTTCATGGGTGTCTCCAGGCGTGATATAAGGGAGCTGGCCTTCCAATACGCCGAAGACAACAACTTAAATCATCCCTTCGATGTCAACAGTCGCATGGCCGGCGAAGATTGGGTCAGAAACTTCCTGAAAAGGAATCCAGAATTACTGAACAGGTCCGAAAAAGAATACGAGCTGGAACCCGTCAACTTTGACCAGTTCTACCACTTCATGTGTCAACTGTCATGA
- Protein Sequence
- MVRKYERMSGRQSWSEEDMAKAVAAVVSGKMGYKLAARTYHIPRSTLQRRASKIRYQLPDEPKPLMGHYRRVFTDNQEKDLVGYIKSMEKFFMGVSRRDIRELAFQYAEDNNLNHPFDVNSRMAGEDWVRNFLKRNPELLNRSEKEYELEPVNFDQFYHFMCQLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786686;
- 90% Identity
- iTF_00408320;
- 80% Identity
- iTF_01141595;