Pcly023770.1
Basic Information
- Insect
- Papilio clytia
- Gene Symbol
- -
- Assembly
- GCA_018247735.1
- Location
- DWGS01022765.1:2977-3585[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-17 2.6e-13 50.9 0.0 1 42 85 127 85 130 0.94 2 2 2.6 1.5e+04 -2.8 0.0 30 41 130 142 129 143 0.71
Sequence Information
- Coding Sequence
- ATGATGGAGCACACATATCCCCGATACTCTAACGCGTgcgtcggcggcggcggcgggctgcAGCCGGACCACAGCATATACATGAATAACGTCATCAATCCGCACATGAACGACTCCGACATGAACGATTATAGCCAAGGGCTAGGAGTGACTGGACCCTCGCCTGGCCCCAGTTGTTTTCCAGAGGCACAGACTGCTCAAGAAGTAATCCCGCAGACTCAACCTAAGCGACGTCGTACTACAAATCCTCAATCCGAAGAGAACTTCCAAAGGGCGCTTGAAGCTGTTCGTTTTGGTGGCATCGGCTTCTGTAAAGCGGCACGAATGTTTGGAGTAAACAATAGGACACTATGGCTAGAGTACAAAAAGAAGGGGTATCCCAACAACCGGCCCAGTATTAAGAACAGGATAAAACGCGAGCACACAACCCCGCCTCCCGAACCAAAGGAAGATGTACAGCAACCAGAGCAACAGATGGCTCTGATATGTCCACCACATTCTGTGCCAGTAGGTTTTATAGACTCCCGACCGATAGATTTCCCGCTGCAAGGAGTTCCGCACCATTCGCCCCTGAACATTCTCGGTATGAACTTTAATTCGATCCAATAG
- Protein Sequence
- MMEHTYPRYSNACVGGGGGLQPDHSIYMNNVINPHMNDSDMNDYSQGLGVTGPSPGPSCFPEAQTAQEVIPQTQPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKNRIKREHTTPPPEPKEDVQQPEQQMALICPPHSVPVGFIDSRPIDFPLQGVPHHSPLNILGMNFNSIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495708;
- 90% Identity
- iTF_01146134; iTF_01148756;
- 80% Identity
- -