Prud012024.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_956483635.1
- Location
- OY101448.1:9697839-9714624[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.028 1.4e+03 -0.2 2.0 241 286 122 168 70 186 0.64 2 4 0.54 2.8e+04 -4.5 6.2 28 66 230 267 218 301 0.39 3 4 9.6e-117 5e-112 375.6 25.9 1 299 354 650 354 651 0.94 4 4 0.071 3.7e+03 -1.6 3.7 220 245 679 704 654 725 0.47
Sequence Information
- Coding Sequence
- ATGCTACATGCCCATGGTCACGAACTAATTATGGGCACTCCAGGATTCTGCGACAGCATCAAGGAATTCACTACAATATTGATTATTGCGCACCGAAGCCTTACTTTGGTGGGCTATTCCTCTCACTTGTTCCCAGCAGGGAACAGTACTTCTCATCCCTCAACCCTGATGGAGCGATCAAAGTCTTTACGGATGGCTCCAAAAGGGGAAACAGAACTGGCGGAggtttctatgtggaaaacttcaaccagcagcaacattaGTAGCAGCAGCAACTGCGGCAACAACAATATTGAAGTGGCAAACGATGAAATCATCGAGGAGTTATTTGATTTTAGCGATACTGATTTAAAAGAACTCGACGTTATAAAAAACGAAGAAGAAAttagcaacagcaacagcaacaacaactctACTACCAGCTCAGAGCTTTTAACTGAAGGCAGCCATaaattaaaggaaaatcagGAAGTTGATAGAGATTCAGAGGTGCAATTGCAAAATATGACAAGTGATAACAATAATCACAATAATGAAGTAGGACAACAGGTGGAAGTGGTATTGTTATCGTCGCCAATTGATAGCATTGATAAACAAAACGAAGACATACCAAAAAACAATGAATTAGTCACGACTATAGAACCAATAACAAGCAAAATAATTAGCTCAGAAGGAAATGTAGATAAACATGAAATTGATAAAAGCCAGCAAAAAATGGAGACACTGAAATCTGAAGAAAgcgaagaaaaagaaattaataaagaatcTAGTAATACTATAGTACAAATCTCCAATAGTTCTATTGTTACCGAACATTCCCCGAGCTCTGATGCTGACAACAATGACAAAATGTCAACATCTTCAGACGTAAAGTGTATGAAAACAAATGATACTTCAGAGTCATTGCCTTTGATTGGAATTAAAGAAGGTAGTGGCTGCAACCAAAATGATAACAATGATCcagataatgatgatgacgatgatgatcaTGACAATGATGAGTATGCCGAACCATATGATGAACTCTTAGTGCAATTCCTTGATGAATCCAATCATATTGCTGAAGCTAGGTTAGCTGCCAGAAGGCATGCCCGAGCGGAAGCTCGGGAAATACGCATGCGAGAACTAGAACGTCAACAAAAGGAACAAGAATCTAATGCAGATCGTGTTTTCGATATGCATTCAACGGTAACTGGGATTACACCATTGTCACACATGCGTATAGGGTTGGGAAGTTCACCAGTTACAGGTTTACTCAATTCAACAAGAGGCAACTCTATGTCTTCGAGACGCAGCAGTGAAGACTCTCTAGAAGAGGAAGGCCGCAGTTTAAGGGATATACGTCATGAGCTAAAAGATGTCGAAGAACGGTTTCGCAAGGCTATGATAGCGAATGCTCAGTTGGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGTTGAAAGACAAACTGGAAGATATGGAAGAATCATATTCACAATTACAGCGTGAATGTAAGGAAAAGACACGCGATTGTAATGCCTTGAAACGATCGTTGGATAAACTAAGCGAAGAGCTTAAACTGGTACAGGGTCAGCTAAATGAGCGTGACACGCTGATAGCGGAACAAGGTTTAGTTATTGTGGCAGTTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTGGAAAATGCACAattattgggttcggtacaagGATCATTAGATGTTCGACTTAAGAAATTCAGTGAAGAGAAACAACAACTGCAGGCTGAAGTTCAACAATTGCAGGAACAATTAGATTCGTATAAAAGTCAGGGGAAAGGCCGAGGTAAAGGCAGTTCGTCGAATGGTCCCATAGGTTCAGATGATGATGATTATGAAGCTCAAAgAGAAGCTAATAAAATCATAATGGATTATAAATATAAGTTACAAAAAGCTGAACAGGAAATTGCTAGTCTTCAATCCAGTTTAGCACGTTCTGAAACACAAGTTATACGCTATAAAAGTACAGCTGAAGCTGCCGAAAAAGCTGAGGCCGAACTTAAAATCGAAAGAAGAAAATTGCAAAGAGagAATCGCGAAGCAATGGAAAAGCTTGAAGAGTTAGAAACATCAAATAATCATCTACTTAAACGTTTGGACAAATTAAAGAATGCCAAAAGTGCTTTGCTAAAGGATCTCTGA
- Protein Sequence
- MLHAHGHELIMGTPGFCDSIKEFTTILIIAHRSLTLVGYSSHLFPAGNSTSHPSTLMERSKSLRMAPKGETELAEVSMWKTSTSSNISSSSNCGNNNIEVANDEIIEELFDFSDTDLKELDVIKNEEEISNSNSNNNSTTSSELLTEGSHKLKENQEVDRDSEVQLQNMTSDNNNHNNEVGQQVEVVLLSSPIDSIDKQNEDIPKNNELVTTIEPITSKIISSEGNVDKHEIDKSQQKMETLKSEESEEKEINKESSNTIVQISNSSIVTEHSPSSDADNNDKMSTSSDVKCMKTNDTSESLPLIGIKEGSGCNQNDNNDPDNDDDDDDHDNDEYAEPYDELLVQFLDESNHIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVTGITPLSHMRIGLGSSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAVENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVQQLQEQLDSYKSQGKGRGKGSSSNGPIGSDDDDYEAQREANKIIMDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399449;
- 90% Identity
- -
- 80% Identity
- -