Pger020353.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783210.1:14325349-14327715[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.015 1.1e+02 4.0 0.1 22 44 149 171 143 175 0.88 2 8 0.0048 36 5.6 0.1 25 48 230 253 218 257 0.79 3 8 0.00043 3.3 9.0 0.1 13 44 318 347 306 356 0.82 4 8 1.7 1.3e+04 -2.6 0.0 25 36 356 367 349 376 0.69 5 8 0.00037 2.8 9.2 0.0 18 48 404 434 396 440 0.78 6 8 0.24 1.8e+03 0.2 0.1 22 47 465 490 460 502 0.78 7 8 0.11 8.7e+02 1.2 0.1 11 43 509 542 506 547 0.75 8 8 0.006 45 5.3 0.1 21 46 548 573 541 578 0.86
Sequence Information
- Coding Sequence
- atggaaGTATCAGAAGACACACCAGAAATGGATATGGAGCGTATGTGTAGATCATGCATGACAGATGTGGGTGAAATGAAATCTGTATTTTTGAGTGATACTACACTTGGAGAATCACTGCCTCGTATTACTGACATGCTAATGTCATTTACTTCAGTGCAGGTTTTGGAAGATGATGGACTTCCAGGTCAAATTTGTAATCAATGCAGTCAGCAAGTTAGTTCTGCATATACATTTAAACTACTTTGTGAACGTTCAGATGCAGCATATAGAAATTACACTCGTAAAAATAAtaccaataaaattaaagaagaaagTCCAACAACTGACTCACAAGAATATAGCGATTTTTCGATAAAACCAAAAATAGAATTAACTgaatttgaagaaaaaatagATACAGATAATTATGAAAATGTTGAGAATgaagaaaataatacaaatgaGAGGCAGCATTCCTGTGATGTTTGTCAAAAAACTTTCACAGAAGCGAGATACCTTAAGAGGCATATGTCGTCTCATGCAACTGAGGATTTAGACGAATTCGAATGTAAATATTgcgataaaatatttaataaaaaagacgTTTTACAAAAACACATGAAAAAATGTCAAAAAGATGAAGTCACCATGGATATTAAAAACAGTTCTGCAACTGTAACGAAAACTAAATCTTCAAAAGCATCTCAGGAATGTTCTGAATGTGGTTCCAAATTTGCAAGGAAACAAAATTTAGTTCGTCATTTACAACTGCATCACAATAACGATAGCAGCCCCAGTTCGCCTCGCGATGGAGTATCTCCATCACGTGATAGCGACTCTGAAATTAAAAGCGAAGATCTTCCAAACGTTGAAGTGATTCTCACAGAGgaagaaaagaaatttaaatgtaaaatatgttcGAAAGAATTTGCTAAACAGAAATCTTATGCAGCACACATGACTAAACATATAGATCCTGCAACTAGAGGTCAAAAGGAGTTCCCATGCACAGTATGTCAAAAAGTGTTTAATCGACGAAAGAATTTAACCCAGcaTCTGCTAACTCATGAAACAACAAAAGCTAATAAATGCGATTTGTGTTATCGGACGTTCTCCAGACCAGATCAGCTAGCGTTGCATATGAATAACCACACAGGACAAAAACGACACGTTTGTCCTCATTGTAGCAAGGGTTTTAATATGCTGTCTACTTTAAAAGACCACTTGCGAACCCACAGCGGAGAAAAACCATTCCTGTGTTCTATATGTGgcaaaggTTTTAGTCAAAACACAAATCTGAAACAACATGTAATGAGGCATAATCAAACCAAGCCATTTAAATGTACAACTTGTGGATATAGTTTTGTCAGCAAAGGCGAACTTGATGCTCATTTAAGAAAACACACGGGTGATCATCCCTTTGTATGTGATATATGCGGTACAGGTTTTACTACATCTAGCTCTTTAgTAAAACATAAGAGAATACATTCCGGAGAGAAGCCATATGCCTGTGAATTTTGTCCAATGCGTTTTACGGCACTTGGAACTTTGAAGAACCATCGTAGAACACATACTGGCGAAAAGCCTTATGCTTGTACATTCTGCGAACGAGCTTTTGCACAGAAAAGTGACCTAGTGTCACACACAAGAACACATACAGGAGAACGCCCTTATGTTTGTGGTGTATGTGGTCATGCATTCCAACAATCAAGCGCATTAAAAACTCATAGTAAAATGCATGTTTCAGCTGCAGTTGCACAAACACCACCAATACCTGTTGTACCACCATCTAGTAGTGTTCAAGTTATTCCTTATTTggtacaaaattaa
- Protein Sequence
- MEVSEDTPEMDMERMCRSCMTDVGEMKSVFLSDTTLGESLPRITDMLMSFTSVQVLEDDGLPGQICNQCSQQVSSAYTFKLLCERSDAAYRNYTRKNNTNKIKEESPTTDSQEYSDFSIKPKIELTEFEEKIDTDNYENVENEENNTNERQHSCDVCQKTFTEARYLKRHMSSHATEDLDEFECKYCDKIFNKKDVLQKHMKKCQKDEVTMDIKNSSATVTKTKSSKASQECSECGSKFARKQNLVRHLQLHHNNDSSPSSPRDGVSPSRDSDSEIKSEDLPNVEVILTEEEKKFKCKICSKEFAKQKSYAAHMTKHIDPATRGQKEFPCTVCQKVFNRRKNLTQHLLTHETTKANKCDLCYRTFSRPDQLALHMNNHTGQKRHVCPHCSKGFNMLSTLKDHLRTHSGEKPFLCSICGKGFSQNTNLKQHVMRHNQTKPFKCTTCGYSFVSKGELDAHLRKHTGDHPFVCDICGTGFTTSSSLVKHKRIHSGEKPYACEFCPMRFTALGTLKNHRRTHTGEKPYACTFCERAFAQKSDLVSHTRTHTGERPYVCGVCGHAFQQSSALKTHSKMHVSAAVAQTPPIPVVPPSSSVQVIPYLVQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01137108;
- 90% Identity
- iTF_01137108;
- 80% Identity
- iTF_01137108;