Basic Information

Insect: Panorpa germanica
Gene Symbol: -
Assembly: GCA_963678705.1
Location: OY783210.1:14325349-14327715[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.9e-05 0.0012 20.2 3.0 1 23 152 174 152 174 0.97

2 13 1.3e-05 0.00082 20.7 1.5 1 22 182 203 182 203 0.96

3 13 7.3e-05 0.0047 18.3 1.6 2 23 231 252 230 253 0.94

4 13 3.8e-05 0.0024 19.2 1.8 1 23 295 317 295 317 0.98

5 13 6.4e-07 4.1e-05 24.8 1.4 1 23 328 350 328 350 0.98

6 13 1.5e-05 0.00098 20.5 0.6 2 23 357 378 356 378 0.97

7 13 2.9e-05 0.0019 19.6 3.4 1 23 384 406 384 406 0.98

8 13 9.8e-07 6.3e-05 24.2 0.8 1 23 412 434 412 434 0.95

9 13 1.4e-06 9.2e-05 23.7 0.6 1 23 440 462 440 462 0.99

10 13 5.2e-07 3.3e-05 25.1 0.3 1 23 468 490 468 490 0.98

11 13 0.00024 0.016 16.7 0.6 1 23 496 518 496 518 0.98

12 13 6.9e-06 0.00044 21.6 0.5 1 23 524 546 524 546 0.98

13 13 5.6e-05 0.0037 18.7 0.7 1 23 552 574 552 574 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.9e-05	0.0012	20.2	3.0	1	23	152	174	152	174	0.97
2	13	1.3e-05	0.00082	20.7	1.5	1	22	182	203	182	203	0.96
3	13	7.3e-05	0.0047	18.3	1.6	2	23	231	252	230	253	0.94
4	13	3.8e-05	0.0024	19.2	1.8	1	23	295	317	295	317	0.98
5	13	6.4e-07	4.1e-05	24.8	1.4	1	23	328	350	328	350	0.98
6	13	1.5e-05	0.00098	20.5	0.6	2	23	357	378	356	378	0.97
7	13	2.9e-05	0.0019	19.6	3.4	1	23	384	406	384	406	0.98
8	13	9.8e-07	6.3e-05	24.2	0.8	1	23	412	434	412	434	0.95
9	13	1.4e-06	9.2e-05	23.7	0.6	1	23	440	462	440	462	0.99
10	13	5.2e-07	3.3e-05	25.1	0.3	1	23	468	490	468	490	0.98
11	13	0.00024	0.016	16.7	0.6	1	23	496	518	496	518	0.98
12	13	6.9e-06	0.00044	21.6	0.5	1	23	524	546	524	546	0.98
13	13	5.6e-05	0.0037	18.7	0.7	1	23	552	574	552	574	0.98

Sequence Information

Coding Sequence: atggaaGTATCAGAAGACACACCAGAAATGGATATGGAGCGTATGTGTAGATCATGCATGACAGATGTGGGTGAAATGAAATCTGTATTTTTGAGTGATACTACACTTGGAGAATCACTGCCTCGTATTACTGACATGCTAATGTCATTTACTTCAGTGCAGGTTTTGGAAGATGATGGACTTCCAGGTCAAATTTGTAATCAATGCAGTCAGCAAGTTAGTTCTGCATATACATTTAAACTACTTTGTGAACGTTCAGATGCAGCATATAGAAATTACACTCGTAAAAATAAtaccaataaaattaaagaagaaagTCCAACAACTGACTCACAAGAATATAGCGATTTTTCGATAAAACCAAAAATAGAATTAACTgaatttgaagaaaaaatagATACAGATAATTATGAAAATGTTGAGAATgaagaaaataatacaaatgaGAGGCAGCATTCCTGTGATGTTTGTCAAAAAACTTTCACAGAAGCGAGATACCTTAAGAGGCATATGTCGTCTCATGCAACTGAGGATTTAGACGAATTCGAATGTAAATATTgcgataaaatatttaataaaaaagacgTTTTACAAAAACACATGAAAAAATGTCAAAAAGATGAAGTCACCATGGATATTAAAAACAGTTCTGCAACTGTAACGAAAACTAAATCTTCAAAAGCATCTCAGGAATGTTCTGAATGTGGTTCCAAATTTGCAAGGAAACAAAATTTAGTTCGTCATTTACAACTGCATCACAATAACGATAGCAGCCCCAGTTCGCCTCGCGATGGAGTATCTCCATCACGTGATAGCGACTCTGAAATTAAAAGCGAAGATCTTCCAAACGTTGAAGTGATTCTCACAGAGgaagaaaagaaatttaaatgtaaaatatgttcGAAAGAATTTGCTAAACAGAAATCTTATGCAGCACACATGACTAAACATATAGATCCTGCAACTAGAGGTCAAAAGGAGTTCCCATGCACAGTATGTCAAAAAGTGTTTAATCGACGAAAGAATTTAACCCAGcaTCTGCTAACTCATGAAACAACAAAAGCTAATAAATGCGATTTGTGTTATCGGACGTTCTCCAGACCAGATCAGCTAGCGTTGCATATGAATAACCACACAGGACAAAAACGACACGTTTGTCCTCATTGTAGCAAGGGTTTTAATATGCTGTCTACTTTAAAAGACCACTTGCGAACCCACAGCGGAGAAAAACCATTCCTGTGTTCTATATGTGgcaaaggTTTTAGTCAAAACACAAATCTGAAACAACATGTAATGAGGCATAATCAAACCAAGCCATTTAAATGTACAACTTGTGGATATAGTTTTGTCAGCAAAGGCGAACTTGATGCTCATTTAAGAAAACACACGGGTGATCATCCCTTTGTATGTGATATATGCGGTACAGGTTTTACTACATCTAGCTCTTTAgTAAAACATAAGAGAATACATTCCGGAGAGAAGCCATATGCCTGTGAATTTTGTCCAATGCGTTTTACGGCACTTGGAACTTTGAAGAACCATCGTAGAACACATACTGGCGAAAAGCCTTATGCTTGTACATTCTGCGAACGAGCTTTTGCACAGAAAAGTGACCTAGTGTCACACACAAGAACACATACAGGAGAACGCCCTTATGTTTGTGGTGTATGTGGTCATGCATTCCAACAATCAAGCGCATTAAAAACTCATAGTAAAATGCATGTTTCAGCTGCAGTTGCACAAACACCACCAATACCTGTTGTACCACCATCTAGTAGTGTTCAAGTTATTCCTTATTTggtacaaaattaa
Protein Sequence: MEVSEDTPEMDMERMCRSCMTDVGEMKSVFLSDTTLGESLPRITDMLMSFTSVQVLEDDGLPGQICNQCSQQVSSAYTFKLLCERSDAAYRNYTRKNNTNKIKEESPTTDSQEYSDFSIKPKIELTEFEEKIDTDNYENVENEENNTNERQHSCDVCQKTFTEARYLKRHMSSHATEDLDEFECKYCDKIFNKKDVLQKHMKKCQKDEVTMDIKNSSATVTKTKSSKASQECSECGSKFARKQNLVRHLQLHHNNDSSPSSPRDGVSPSRDSDSEIKSEDLPNVEVILTEEEKKFKCKICSKEFAKQKSYAAHMTKHIDPATRGQKEFPCTVCQKVFNRRKNLTQHLLTHETTKANKCDLCYRTFSRPDQLALHMNNHTGQKRHVCPHCSKGFNMLSTLKDHLRTHSGEKPFLCSICGKGFSQNTNLKQHVMRHNQTKPFKCTTCGYSFVSKGELDAHLRKHTGDHPFVCDICGTGFTTSSSLVKHKRIHSGEKPYACEFCPMRFTALGTLKNHRRTHTGEKPYACTFCERAFAQKSDLVSHTRTHTGERPYVCGVCGHAFQQSSALKTHSKMHVSAAVAQTPPIPVVPPSSSVQVIPYLVQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01137641;
90% Identity: iTF_01137641;
80% Identity: iTF_01137641;