Phep020807.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pandemis heparana
Gene Symbol
sip1
Assembly
GCA_963854515.1
Location
OY978026.1:10739482-10754370[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 6.4e-61 9.7e-57 193.4 0.8 6 275 368 620 363 620 0.96
2 2 0.36 5.5e+03 -2.6 0.0 75 189 634 663 624 675 0.41

Sequence Information

Coding Sequence
ATGTCAGACGACGAGGTAATACGTTTTGAGATCACCGATTACGACTTGGATAACGAGTTTAACATAAACAGACGAGGGAGAGCCAAGAAAGAACAACAGATTTATGGTGTATGGGCCAAGGACAGTGACGAGGATGACAATGAAGACAATGTGCGGCAGAGGAGCCGCAAACAGAAGGACTATGCCGCCCCCATCGGGTTTGTGGCTGGTGGGGTGCAGCAGGCCGGGAAGAAGAAGGAACCTAAACAGGAATTAGAACCAGCTGAGTCAACTTCTCGGGTCACCATAGCAGACAGTTCCGATGAAGAACCGACAGCGGTCCCGGATGAATCGGAGACGGCTGGCATCAGACGGCAAGGCCAGGGCATGAGGCCTGTTAACCTCGGAGGCAATATGGGCAATTGGGAGAAGCATACCAAGGGTATAGGGGCAAAGTTACTATTGCAGATGGGCTACCAACCAGGGCTTGGGTTGGGCAAAGACCTGCAGGGTATCTCGGCACCGGTCGAAGCGACAGTAAGGAAGGGCAGGGGTGCTATTGGTGCCTATGGCCCGGAGAAGGCAGCGATGAAAGTGAAAAAGGAAGAGGAGCGGCGTTTGAAAGAGAAACAAGACGAAGAGAAAGCGCCGGAAAAGTCGTACCACTGGAAGAAATCGCACAAAGGCCGCTATTTCTACCGCGATTCCGCCGACGTCATACAAGAGGGTAAACCTACCATGCACTCTATCAGCAGTTCGGAGCTGGCTCGCGTGCCGGTGATCGACATGACGGGCAAGGAGAAGCGAGTGCTGAGCGGGTACCACGCGCTGCGGGCCGCGGCGCCGCGCTTCGAGCACGAGCCGCGGCGGCGCTGCACCAACTTCGAGGCGCCGCAGCTGCTGCACAACCTGCAGGTCATGGTCGAGTGCTGTGAGCAGGATATAATCCAAAACGCACGCGAACTCCAACAAGCGGAGGACGAGATAGTTGTGCTAGAGCGGGACATCCGAGAGTGCGACGACAAGCTCGCCGAACAAGACGTGGTGATAGACCGAGTCAGGGACATCAAAGCGCGGGTCGCACAGCTGAGTCGGCCCGATCTCTCGCTCGAAACTGCCTATGATGTCGTGGAGGATTTGAAGAACACCTACACCCAAGAATACGACGCGTTCGGCATTGGCGCTATCGCTGGTAACATAGTGAGCCCGCTGTTCAGCGCCATGATGGCGGGGTGGGAGCCCTTCGCGGCGCCAGCGGAGCCCGTGCCCGCGTTCCTCAAGTGGCGGCCGCTGCTCACCGAGGAGGCCTACAACAGCCTCATTTGGCAACACGTCGCGCCCAAACTTAAGGCTGCTGCCGCGTCGTGGAACCCGCGCGTGCCGGAGCCGATGCTGGCGCTGGTGTCTCACTGGTCGGCGGCGCTGGAGCCGGGCTGGCGGGcgggcgcgctgctggccggCCTGGTGGCGCCGCGCCTGCTGGACGCCGTGCGCAACTGGGACCCCACGCACGACACGCAGCCGCTGCACCACTGGGTGCTGCCCTGGCACCCGCTCGCAGGCGAGGCACTGTCGGTGTCGGTGTACCCGGTGATCCGGTcccggctggcggcggcgctgtCGGCGTGGCACCCGGCGGACGGCTCGGCGCGCGGGCTGCTGGCGGCGTGGCGCGGCGCCTGGGGGCCCGCGCTCACCGCGCTGCTGCACCAGCACATCGTGCCCAAGCTGGAGCACTGCCTGCAGCACGCGCCCGTCCATCTCGTGGGCCAGGAGAACACGGCCTGGCGCTGGTGCGCGGAGTGGCTGGAGCTGCTGGGCGCGCCCACGCTGGCGGgcgtcgcggcgcgcgcgctgctgccgcgctggctggccgcgctggccgccTGGCTCAACACGCAGCCGCAGCACCGCGCCGTGCTCAACAGCTACACGCAGTTCAAGAAAATGTTCTCCGACGAGCTGTTAAAAGAGCCGGCCGTGCGAGACGCCTTCAGGAAAGCCCTCGACATGATGAACCGAAGCGCGGACATCGATACAGTAGAGCCGCCTCCCCCGCCCCGCTTCACCATCCCCGTAGAAAAGAAGGAAACCAGCAAAATAGCAGATGTTCTCGCTTCAACCACGCAGCAGAAATCTTTCTCGGAACTACTGGAGTCCCGGTGTATAGAGAGAGGTATCACTTATGTACCCGTAGCGGGTAAGACTAGGGAGGGGAGGCCGCTGTTCAAGATTGGGGCGGACTTGCAGTGCTACGTTATAAGGAACGTTATTATGTATTCCCAGGATAATGGTAGGACGTTCGAGCCCGTTGGATTGGATAGGCTGTTGGGGATGGCTCAGGAGTAA
Protein Sequence
MSDDEVIRFEITDYDLDNEFNINRRGRAKKEQQIYGVWAKDSDEDDNEDNVRQRSRKQKDYAAPIGFVAGGVQQAGKKKEPKQELEPAESTSRVTIADSSDEEPTAVPDESETAGIRRQGQGMRPVNLGGNMGNWEKHTKGIGAKLLLQMGYQPGLGLGKDLQGISAPVEATVRKGRGAIGAYGPEKAAMKVKKEEERRLKEKQDEEKAPEKSYHWKKSHKGRYFYRDSADVIQEGKPTMHSISSSELARVPVIDMTGKEKRVLSGYHALRAAAPRFEHEPRRRCTNFEAPQLLHNLQVMVECCEQDIIQNARELQQAEDEIVVLERDIRECDDKLAEQDVVIDRVRDIKARVAQLSRPDLSLETAYDVVEDLKNTYTQEYDAFGIGAIAGNIVSPLFSAMMAGWEPFAAPAEPVPAFLKWRPLLTEEAYNSLIWQHVAPKLKAAAASWNPRVPEPMLALVSHWSAALEPGWRAGALLAGLVAPRLLDAVRNWDPTHDTQPLHHWVLPWHPLAGEALSVSVYPVIRSRLAAALSAWHPADGSARGLLAAWRGAWGPALTALLHQHIVPKLEHCLQHAPVHLVGQENTAWRWCAEWLELLGAPTLAGVAARALLPRWLAALAAWLNTQPQHRAVLNSYTQFKKMFSDELLKEPAVRDAFRKALDMMNRSADIDTVEPPPPPRFTIPVEKKETSKIADVLASTTQQKSFSELLESRCIERGITYVPVAGKTREGRPLFKIGADLQCYVIRNVIMYSQDNGRTFEPVGLDRLLGMAQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00342214;
90% Identity
-
80% Identity
-