Pcor024784.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421878.1:369483-386896[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.5e-06 0.00022 22.1 0.5 1 23 253 275 253 275 0.99 2 12 0.13 8.3 7.7 1.4 1 23 282 304 282 304 0.93 3 12 0.35 22 6.4 1.7 1 23 308 330 308 330 0.92 4 12 0.00026 0.017 16.2 3.8 1 23 335 358 335 358 0.96 5 12 0.027 1.8 9.9 0.1 2 23 364 386 364 386 0.94 6 12 0.6 39 5.6 0.0 3 20 398 415 397 417 0.92 7 12 0.37 24 6.3 0.0 3 19 427 443 426 445 0.94 8 12 0.019 1.2 10.4 3.3 1 23 453 476 453 476 0.93 9 12 0.00013 0.0084 17.2 0.3 3 23 507 527 506 527 0.97 10 12 2e-05 0.0013 19.7 0.1 1 23 533 555 533 555 0.98 11 12 0.00024 0.015 16.3 0.1 1 23 561 583 561 583 0.97 12 12 0.00084 0.054 14.6 2.1 1 23 589 612 589 612 0.96
Sequence Information
- Coding Sequence
- ATGAAATTTGTGAAAGAAGAGTGTACTAATTCGTCGGCGAAGTTATTGACTTGTCGGGCCTGTTTGGCTACTGATGTTATTTTGTATAATATCCACGAGAACCGACTTTCAGAGGCGTTTGCGCACATTACTGGGACTCCTGTTTTAGTGCTGGATGGCCTCCCGCAACACCTCTGTGGGTACTGCTGCGCTTCCCTCCACAAATGCATGCTCTTCCGTGCCAAGTGCCTCCGTGCACAGCACTGCTTAGAGGGGCTCAGTCATGAGCTCACCACCAGCTACGTAAGAACCATAGACCGTCTCTCGCATCGACTCCTGCTGAATCTCGCTTTAAAAAAACTAGACGCCACAAACTACAAAGACTCTGTAGAagtagaagaaataaaaaaagaggAAGACATTGTCAACATATTTCTAGAATCTGACGATTTGAAAGTAGAAtacgaaattaaaaacaatgaagATGTTATAGACGACTTCAGTGATGGCAACGATGCTTCGGAGCATATATTTGTTGCGACGAACCCGGTGGCCGACGTTAAGAAGGAGAGGAAGGGGAGAAGAAAAAAGAGTGTCGCGGAGAAGAGCGTGAAGAGGAAGATCAAGAAGAGGATATCGGATAACGACTACTTGCCCGATTTTGATTTTGCGAAGTTCGAGAGCAGTTACAACGTTGAAATTATTACTTTAACTAAGGAGCAGCAGCTGCAGGAGGTGCGCGCGCGCAAGTCTTCGGACAACTACCAGTACGCGGCCTACAAGTGCGAGGAGTGCGGCAAGGGCTTCCGCGCGCAGGACGCCTACAACAACCACATGACGAGACACAGCCCGagcATGGGCGCGCATGCGTGCGAGGTGTGCCGCGTGCGCTTCAAGCGCGCGTCGCGCCGGCAGGAGCACCAGGACCTGCACCGGCTCAAGTTCCTCTGCAAGGAGTGCAGCTTCGTCTCCAGGAACAGGTATCAAGCGAAGAAGCACTTCGAATGGCACACGGGCAAGATACACGTGTGCAAGCACTGCGGCGCCAGCTTCACCAAGAGCTCGACGTACCTGTCGCACGTGCGGCTGCAGCACCCCGCCATGAACGCGTCGTGCGACGTCTGCGGGGAGACCTTCGTCGGCCGCCTCGGCCTGCTGCAGCACAAGTCGCGCGCGCACACGCAGGTGAGCTCGGGGCAGCAGGAGGCGGCGTGCGGGGCGTGCGCGCGGCAGTTCGCCAGCCGGGGGGCGCTCGCCCGCCACCAGGCCGCGGGGGGCTGCGGCCCCGGCTCCAGGCCTTGCCTGGTGTGCGGCGAGTCGCTGCCCACCGAGGAGTTGCTGCAGAGTCACGCGGCCGAGTGCCGCGACGCGGAGCAGTTCAAGTGTGTAGAGTGCAACAAAACGTTCGCCAGCGCGTCCTCGTGCGACGTGCACCACCAGCGCGTGCACCTCAACGTGCGCTGGCGCAAGGCGCGCGACCGCGCCGCCCACGCGCGCCACGAGCGCCGCCCCGAGCCGCCCAAGCGCAGGGAGGCCATGTGCGAGATCTGCGGCAAGGCCTGCGAGTCGAACGCGGCGCTGGTGTACCACCAGCGCAGCCACACGGGCGAGCGCCCCTACCGCTGCGCGCAGTGCCCGAAATCCTTCACCATGCCGCAGGCTCTCATTaCGCACCAGCTGGTGCACTCGGACGCGCGGCCGTACATGTGCGCGGCGTGCCCCAAGGCCTTCAAGCAGAAGGTGGCGCTCCAGCTGCACAGCCGGGTGCACACAGGCGAGCGGCCGTACAAGTGCTCGATGTGCGACAGCTCCTTCAAGCAGGGTCCGCATCTCCGCACGCATGTCAAGCTTATGCACAACGTGCCCTGCGACAAGCAACGCCGCGGCGCCAAACGGAAGACGCTGCagtag
- Protein Sequence
- MKFVKEECTNSSAKLLTCRACLATDVILYNIHENRLSEAFAHITGTPVLVLDGLPQHLCGYCCASLHKCMLFRAKCLRAQHCLEGLSHELTTSYVRTIDRLSHRLLLNLALKKLDATNYKDSVEVEEIKKEEDIVNIFLESDDLKVEYEIKNNEDVIDDFSDGNDASEHIFVATNPVADVKKERKGRRKKSVAEKSVKRKIKKRISDNDYLPDFDFAKFESSYNVEIITLTKEQQLQEVRARKSSDNYQYAAYKCEECGKGFRAQDAYNNHMTRHSPSMGAHACEVCRVRFKRASRRQEHQDLHRLKFLCKECSFVSRNRYQAKKHFEWHTGKIHVCKHCGASFTKSSTYLSHVRLQHPAMNASCDVCGETFVGRLGLLQHKSRAHTQVSSGQQEAACGACARQFASRGALARHQAAGGCGPGSRPCLVCGESLPTEELLQSHAAECRDAEQFKCVECNKTFASASSCDVHHQRVHLNVRWRKARDRAAHARHERRPEPPKRREAMCEICGKACESNAALVYHQRSHTGERPYRCAQCPKSFTMPQALITHQLVHSDARPYMCAACPKAFKQKVALQLHSRVHTGERPYKCSMCDSSFKQGPHLRTHVKLMHNVPCDKQRRGAKRKTLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156501; iTF_01136056; iTF_00325689;
- 90% Identity
- iTF_01136056;
- 80% Identity
- -