Axyl023970.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387371.1:559073-592047[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1e-05 0.00076 20.6 0.2 1 23 190 212 190 212 0.98 2 12 0.11 8.1 7.9 1.4 1 23 219 241 219 241 0.93 3 12 1 76 4.8 1.6 1 23 245 267 245 267 0.91 4 12 0.00023 0.017 16.4 3.8 1 23 272 295 272 295 0.96 5 12 0.095 6.9 8.1 0.0 3 23 302 323 301 323 0.94 6 12 0.0021 0.15 13.3 0.1 2 20 334 352 333 354 0.93 7 12 0.0024 0.17 13.1 0.3 3 23 364 385 363 385 0.94 8 12 0.00013 0.0093 17.1 2.5 1 23 390 413 390 413 0.97 9 12 0.00011 0.0082 17.3 0.3 3 23 445 465 444 465 0.97 10 12 8.3e-05 0.0061 17.7 0.1 1 23 471 493 471 493 0.97 11 12 0.0002 0.015 16.5 0.1 1 23 499 521 499 521 0.97 12 12 0.00023 0.017 16.3 2.1 1 23 527 550 527 550 0.97
Sequence Information
- Coding Sequence
- ATGGGAACGGAAGCGATACATGCCCTCGGTACCGCTCTGCTTTCAGAGCATGACATGAGTGCGTGTGAGCCAACTTTGGGGGCGGCAGGCCTAACCACCAGCTACATAAAAACCATAGACCGCCTCTCCCATCAGCTCCTACTAAATCTCACTTTAAAAAAACTCGACGCCACAGACTACACAGACTCCGTACAAGTCGAGGAAATTAAAAAAGAAGACATAGACAACATATTTCCAGAGTCTGACGATTTGAAAATAGAATATGAAATCAAAGACAAGGATGATGTAGACTTTAGCAATGATGATAATACTTCTGAACATATATTTGTTACAACAAACCCGGTGGCAGATGTCAAGAAAAGAAAAGGGAGAAGGAAAAAAATCGTGACGGAGAAGAGAGCGAAGAGGAAAATCAAGAAGAGAATCTCGGATAATGACTATTTGCCGGACTTTGATTTTGCTAAGTTCGAGAGCAGTTACAGCGTTGAAATTATAGCTTTAACTAAGGAGCAACAGCTGGAAGAGATCCAGGCGCGTAAGTCCTCCGACAACTACCAGTACGCGGCGTTCAAGTGCGAGGAATGCGGGAAGGGGTTCCGAGCTGAGGACGCCTACAATAACCACATGATACGGCACAGCCCGAGCATGGGCGGGCACGCGTGCGAGGTGTGCCGGGTGCGTTTCAAGCGCGCGTCCCGCCGGCAGGAGCACCAGGACCTGCACCGGCTCAAGTTCCTCTGCCGGGAGTGCAGCTTCGTGTCCAGGAACAGGTATCAGGCGAAGAAGCATTTCGAGTGGCACAGCGGCAAGATTCACGTCTGCAAGCACTGCGGCGCGAGCTTCACCAAGAGCTCGACGTACCTGTCGCACGTGCGGCTCCAACATCCCGCCATGAACGTGGCGTGCGACGTCTGCGGCGAACCCTTCGTTGGACGCCTGGGTTTGCTGCAGCACAAGTCGCGCGCGCATCCACAGATCAGTTCGGTGAAGCCGGAATCGAAGTGTGTGTCGTGCGGCCGGCAGTTCTCGAGCCGGGACGCCCTGGCCCGCCACGCCGCCTCCGCAGGCTGCGACCCCGACTCGAGGCCTTGCTTGATCTGCGGCGAGTCGCTGCGCACTGAGGAGTTGCTACAGAGTCATATCCAGGAGTGCCACAATGCTGACCAGTTCAAGTGCTTGGAGtgtaacaaaacgtttgcAAGCTCGTCCTCGTACGACGTGCATCACCAACGCGTCCACTTGAACGTGCGCTGGCGCAAGTCGCGCGACAAACGCGCGGCGGACGCGCGGCAGACGCGCCGCGACGAGCCGCCCAAGCGGAGAGAGGCCATGTGCGAGATATGCGGCAAGGCTTGTGAGTCGAACGCGGCGCTCGTGTACCACCAGCGCAGCCACACGGGCGAGCGGCCCTATGCGTGCGTGCAGTGCCCCAAGACTTTCACCATGCCCCAGGCGCTCATCACGCATCAGCTGGTGCATTCGGACGAGCGGCCCTACATGTGCGCGGCGTGCCCCAAAGCCTTCAAGCAAAAAGTGGCTCTACAACTCCACAGCAGAGTCCATACCGGCGAGCGGCCTTACAAGTGTTCCATGTGCGACAGCTCCTTCAAACAGGGTCCCCATCTGCGCACGCACATCAAGCTAATGCACAACGTGCCGTGCGACAAGCAACGCCGCGGCGTCAAGCGAAAGGCGCTGTGA
- Protein Sequence
- MGTEAIHALGTALLSEHDMSACEPTLGAAGLTTSYIKTIDRLSHQLLLNLTLKKLDATDYTDSVQVEEIKKEDIDNIFPESDDLKIEYEIKDKDDVDFSNDDNTSEHIFVTTNPVADVKKRKGRRKKIVTEKRAKRKIKKRISDNDYLPDFDFAKFESSYSVEIIALTKEQQLEEIQARKSSDNYQYAAFKCEECGKGFRAEDAYNNHMIRHSPSMGGHACEVCRVRFKRASRRQEHQDLHRLKFLCRECSFVSRNRYQAKKHFEWHSGKIHVCKHCGASFTKSSTYLSHVRLQHPAMNVACDVCGEPFVGRLGLLQHKSRAHPQISSVKPESKCVSCGRQFSSRDALARHAASAGCDPDSRPCLICGESLRTEELLQSHIQECHNADQFKCLECNKTFASSSSYDVHHQRVHLNVRWRKSRDKRAADARQTRRDEPPKRREAMCEICGKACESNAALVYHQRSHTGERPYACVQCPKTFTMPQALITHQLVHSDERPYMCAACPKAFKQKVALQLHSRVHTGERPYKCSMCDSSFKQGPHLRTHIKLMHNVPCDKQRRGVKRKAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135092;
- 90% Identity
- iTF_00325689;
- 80% Identity
- -