Cros030330.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000050.1:365582-385647[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1e-05 0.00082 20.6 0.2 1 23 172 194 172 194 0.98 2 12 0.11 8.8 7.9 1.4 1 23 201 223 201 223 0.93 3 12 1 83 4.9 1.6 1 23 227 249 227 249 0.91 4 12 0.00022 0.018 16.4 3.8 1 23 254 277 254 277 0.96 5 12 0.34 27 6.4 0.1 3 23 284 305 283 305 0.93 6 12 0.0052 0.42 12.1 0.0 2 20 316 334 315 336 0.93 7 12 0.047 3.8 9.1 0.1 3 23 346 367 345 367 0.93 8 12 0.00013 0.01 17.2 2.5 1 23 372 395 372 395 0.97 9 12 0.00011 0.0089 17.4 0.3 3 23 427 447 426 447 0.97 10 12 1.2e-05 0.00093 20.5 0.1 1 23 453 475 453 475 0.98 11 12 0.0002 0.016 16.6 0.1 1 23 481 503 481 503 0.97 12 12 0.0011 0.086 14.3 2.8 1 23 509 532 509 532 0.96
Sequence Information
- Coding Sequence
- ATGAAGCAAATAGTTTGTATAGATTGGGTTctaaCCACCAACTATATCAAAACCATAGACCGCCTCTCCCATCAGCTCCTACTGAATctcactttaaaaaaactcgatGCCACAGACTACACAGAGTCTGTACAAGTtgaggaaataaaaaaagaagaggATATAGACAACATAATTCCAGAGTCCGATGATTTGAAAACAGAATATGAAATCAAAGACAAAGATGATGAAGACGACTTTAGCGATGATGTTAATACTTCtgaacatatttttgtaactacaAATCCCATAGCAGATGTCAAGAAAAAGAAAGggagaagaaaaaaaaccgtCACAGAGAAAAGAGTtaagagaaaaattaaaaaaagaatatcgGATAATGATTATTTGCCTGACTTTGATTTTGCCAAGTTTGAGAGCAATTATAGCTGTGAAATAATTGCTTTAACTAAGGAGCAACAGCTGGAAGAGATTCAGGCGCGTAAGTCCTCCGACAACTACCAGTACGCGGCGTTCAAGTGCGAGGAGTGCGGCAAGGGGTTCCGCGCCGAGGACGCCTACAACAACCACATGATACGGCACAGCCCCAGCATGGGCGGGCACGCGTGCGAGGTGTGCCGCGTGCGCTTCAAGCGCGCGTCGCGGCGCCAGGAGCACCAGGACCTGCACCGGCTCAAGTTCCTCTGCCGGGAGTGCAGCTTCGTCTCCCGGAACAGGTACCAAGCGAAGAAGCATTTCGAGTGGCACACGGGCAAGATCCACGTGTGCAAGCACTGCGGCGCGAGCTTCACCAAGAGCTCGACGTATCTGTCGCACGTGCGGCTGCAGCACCCCGCCATGAACGTGGCGTGCGACGCGTGCGGCGAGACCTTCGTGGGCCGCCTCGGGCTGTTACAACACAAGTCGCGTGCGCACCCGCAGATCGCTTCAGTGAAGCCAGAATCTAAGTGTGCGTCGTGCGGGCTGCAGTTCTCAAGCCAAGACGCCCTGGCGCGTCACGCGGCCTCGGCGGGCTGCGACCCCGACTTGAGGCCGTGTCTGACGTGTGGCGAGTCGCTGCCCACTGAGGAGGCGCTGCAGAGTCACGTGCAAGAGTGTCACAACGCGGACCAGTTCAAGTGCTTAGAGTGCAACAAAACGTTTGCAAGCTCGTCCTCGTACGACGTGCACCACCAGCGGGTCCACTTGAACGTGCGCTGGCGCAAGTCGCGCGACAAACGCGCGGCCAACGCGCGGCAGACGCGCCGCGACGAGCCGCCCAAGCGGAGGGAGGCCATGTGCGAGATATGCGGGAAGGCGTGCGAGTCGAACGCGGCGTTGGTGTACCATCAGCGCAGCCACACCGGGGAGCGCCCCTACAAGTGCGCGCAGTGCCCCAAGAGCTTCACCATGCCGCAGGCACTCATCACGCACCAGCTGGTGCACTCCGACGAGCGGCCGTACATGTGCGCGGCGTGCCCCAAGGCCTTCAAGCAGAAGGTGGCCTTGCAGCTGCACAGCAGGGTGCACACAGGCGAGCGTCCGTACAAGTGTTCCATGTGCGACAGCTCTTTCAAGCAGGGTCCCCACCTGCGCACGCACACCAAGCTGATGCACAACGTGCCGTGCGACAAGCAGCGCCGCGGCGTCAAGCGGAAGCTgtga
- Protein Sequence
- MKQIVCIDWVLTTNYIKTIDRLSHQLLLNLTLKKLDATDYTESVQVEEIKKEEDIDNIIPESDDLKTEYEIKDKDDEDDFSDDVNTSEHIFVTTNPIADVKKKKGRRKKTVTEKRVKRKIKKRISDNDYLPDFDFAKFESNYSCEIIALTKEQQLEEIQARKSSDNYQYAAFKCEECGKGFRAEDAYNNHMIRHSPSMGGHACEVCRVRFKRASRRQEHQDLHRLKFLCRECSFVSRNRYQAKKHFEWHTGKIHVCKHCGASFTKSSTYLSHVRLQHPAMNVACDACGETFVGRLGLLQHKSRAHPQIASVKPESKCASCGLQFSSQDALARHAASAGCDPDLRPCLTCGESLPTEEALQSHVQECHNADQFKCLECNKTFASSSSYDVHHQRVHLNVRWRKSRDKRAANARQTRRDEPPKRREAMCEICGKACESNAALVYHQRSHTGERPYKCAQCPKSFTMPQALITHQLVHSDERPYMCAACPKAFKQKVALQLHSRVHTGERPYKCSMCDSSFKQGPHLRTHTKLMHNVPCDKQRRGVKRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135092;
- 90% Identity
- iTF_00156501;
- 80% Identity
- -