Pcor011331.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pandemis corylana
Gene Symbol
-
Assembly
GCA_949127965.1
Location
OX421860.1:10795733-10798264[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-08 1.6e-05 25.1 0.0 1 35 16 51 16 58 0.91

Sequence Information

Coding Sequence
ATGAGTTCTTCGGAAGGTagtaagaaaaaagaaaagaaaacataCACAGAAGAAGATTTAAAGAAAGCATTAAGTGACATTCGTGAGAAGAAAAAATCGATAAGACAAATATGCAAAGAATATGCTATTCCTAAGACCACATTATTGGACAAAATCAGTGGACGCAGACCAGATGGAGTTAAGAAACCGGGACCAGAACCAGCGCTAGGAGTGGATGGTGAAAAAAAGGTAGTTGAATGGCTTCTTAATATTTCCAAATGTGGATTTCCTATGAAAAAACAGGAATTGTTGGATACTGTTCAGAAAATAATTCGTGATGGggggattaaaaataaattcaaagatGATCGCCCAGGTCAAAAGTGGTTTGTAAAATTCTTAGCCAGAAATAATGAAGTCTCACTTAAAAATGCGGAAGGTATTAATAAAGCTAGAGCCCAAGTCACAGAAGAGTCGATCAGATTGTGGTTTAGAGAACTTGAGGAATATTTGGACAGTATACACCAAAAAGATATTTTGAATGACCCGAAAAGAATTTTTAATGGAGACGAAAGTGGATTTTCTCTTTGTCCAAAGACAGGAAAAGTTTTAGGCCCAAGAGGTTTCAAGAACTTATATCAAATAAAGCCAAGtaatgaaaaagaaaacttaacggtattattgacatttaatgCGAATGGAGATATGTGCCCACCTTGTGTCGTGTTTCCATACATTAGACCACCAAAGGCTGTAGTGAATAGCATGCCCCAAGAATGGTGCTTAGGCAGATCGGAGACAGGTTGGATGAGAGGAGAAGTATTCTTTGAATACGTGACCAACGAGTTTCACAACTGGGTGGTGGAAAATAACATCATTAAACCAATTCTTCTGCTGGTAGATGGGCATAAATCGCATATGTCATTAATGCTAAGTACGTTATGCGAAGAACtgcaaattattttgtatgccCTGCCGCCCAACACCACCCATATTTTACAGCCAGCTGACGTCAGCGTCTTTGCACCAGTAAAGACATATTGGAAATCTACAGTCCGCGCATTCCTATCAAAACCGGAAAATTTGAATTCTGCcgttacaaaaacaaacttttgCACATTATTAAATGAAGCATTACAACATCCTAACATGGCCGACAACATCAAAAATGGGTTTAAGCGATGTGGTCTTTACCCATTCGATGCAAATAGTCCAGATTACACTAAATGTGTAAGAAATACTTTGGAAAATGTACAGGCCGTTGATCAACAGTCACAAGATATTACCCACTCGgacattaaaagttttaaaaaagttttaaaacaccTGAAACCGacactaaaagaaaaaaatattaacatgcGAACTATTACGAGAGCAGTCAATAGTTTGAAAAATACTCTCCCTGCAGAAGTTGGCTTTGCAGAGATTTCTATCGAAACTGAATCTGAGAGGTCTCTTATGGAACTATCAATAGAACAAAATAGTACTATTTTAGAATTGGATGCAACTAAAGAAATCACAATCTCTTCATTACACGTAGAAGACGAAAACATAAATGATGAAGCTAACTCCGATTCGACTGTGCAGGTTCAAACAGTAACAGCCGAAATACATTCTGTACCAAAACCATCCACCAATGCCGAGCCTTGCACATCAAAAATCACCAGCAATAGAAATCTAGCTTCTTCTAAAATTGACTATGATGAAATCACACTATATCCGGACAATTCTAAAACTCTTGATACCAACAAAAACAATTCGTTCCCTGATTTGTCTCTTTCGACGTTACACCTTTCTGGCCTTGATGTTGACTCTATCGTGTCCTTAGACGACGTTCTAATTCTACCATTAgaagatattatattatcaacTCCCACTCCCATTACGTCAAGTGTTGAAAAAGAAACTCCTACTAAGGAACAAACGCCAGAACCGCCTCTGACCTCTTTGATTCATACAGTATCAATTGTATCGCCATCCTTCGTTTTACCTACAGGAAACTCTCCTCTAGTACAACCATCTTCAGCAGCTGTTGGCGATTCAAGCCATAAAAAAACCTGTGATCCATTTAAAAACCACCTGATGCTGCCTGAAATTTCTAAAGAAGCAAGAAAACCTAATAATCAAAGGACTCCAGCAGCCATATCTTCTGCTGCATGGAGAAAGTATTACGAAGATAAAGAGCAAACCAAGAACGAAAAACAGGAAGCAATACGAAAAAGAAAGTTAGAACGAATAGAGAAAAAAGAACAGGAGAGAGCTCGAAAGGTTCAAAAAACTGCTCCGAAacgaaaaaagaagaaaaaagtcaCACAGGAAACGATAGAGTCGATAGATGTGGAATCTGAGAAAGAAAATGTACCAGCCGTGGAGCTAATGAAATGTGCTGAATGTGACGATGTATTAATTTCTGATGTAGAAGATGACGATGAGAAAAACATTGGCTGTGACAAGTGTATTAGATGGTATCATCTGAAATGCACGCGATTTCTAGGATTAAGTTATTCAGAAGCCAAAGATAATTCTTTTGAATGTGACTTGTGTGATTAA
Protein Sequence
MSSSEGSKKKEKKTYTEEDLKKALSDIREKKKSIRQICKEYAIPKTTLLDKISGRRPDGVKKPGPEPALGVDGEKKVVEWLLNISKCGFPMKKQELLDTVQKIIRDGGIKNKFKDDRPGQKWFVKFLARNNEVSLKNAEGINKARAQVTEESIRLWFRELEEYLDSIHQKDILNDPKRIFNGDESGFSLCPKTGKVLGPRGFKNLYQIKPSNEKENLTVLLTFNANGDMCPPCVVFPYIRPPKAVVNSMPQEWCLGRSETGWMRGEVFFEYVTNEFHNWVVENNIIKPILLLVDGHKSHMSLMLSTLCEELQIILYALPPNTTHILQPADVSVFAPVKTYWKSTVRAFLSKPENLNSAVTKTNFCTLLNEALQHPNMADNIKNGFKRCGLYPFDANSPDYTKCVRNTLENVQAVDQQSQDITHSDIKSFKKVLKHLKPTLKEKNINMRTITRAVNSLKNTLPAEVGFAEISIETESERSLMELSIEQNSTILELDATKEITISSLHVEDENINDEANSDSTVQVQTVTAEIHSVPKPSTNAEPCTSKITSNRNLASSKIDYDEITLYPDNSKTLDTNKNNSFPDLSLSTLHLSGLDVDSIVSLDDVLILPLEDIILSTPTPITSSVEKETPTKEQTPEPPLTSLIHTVSIVSPSFVLPTGNSPLVQPSSAAVGDSSHKKTCDPFKNHLMLPEISKEARKPNNQRTPAAISSAAWRKYYEDKEQTKNEKQEAIRKRKLERIEKKEQERARKVQKTAPKRKKKKKVTQETIESIDVESEKENVPAVELMKCAECDDVLISDVEDDDEKNIGCDKCIRWYHLKCTRFLGLSYSEAKDNSFECDLCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01091816;
90% Identity
iTF_01091837;
80% Identity
iTF_01134732;