Pscu005283.2
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958295655.1
- Location
- OY282449.1:148046775-148060421[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.6 5.2e+03 -3.6 5.8 232 271 32 70 16 84 0.51 2 4 0.93 8.1e+03 -4.3 0.4 43 72 248 280 233 291 0.44 3 4 6.6e-116 5.7e-112 373.8 27.2 1 299 314 610 314 611 0.93 4 4 0.18 1.6e+03 -1.9 4.0 220 244 639 663 615 685 0.46
Sequence Information
- Coding Sequence
- ATGGACAGCACTGGTGCTGTTGGACGGCGTCGGGTCAATTCGCGCGTTAATGCTGAAGATCAAGCGCTGGATCAAATTGCTAAAGAGGAGCCACAGCAGGAAGTCATGAGTGAGGAGGAGGTAACGAAGAAAAAGGTGGAGGAggaggaaaacaacaacaaagtaaacAAAACGACAACGACATCATTAAATAAGAATACAAATGATAATCATAATAACGATGATGAAATCATCGAGGAGTTTGACTTTAGTGATAGCGATTTAAATGCGCTCAACGAGAATggagacaacagcaacaacaacactggCAATGTAATTGATGAAGTTAATGCTACAAGAGTCGGCAGTGCTTCTGCCACTGCTGACAATGTTTCTATTGTTGACAATAAAGGTTCGCATTCACACGTTAATGAGACAACAAAAGATATACCCAGCACTGAAAAGTGTATAACGAATTTGTCGCAAATCGCAGAGAGCATAGTAGACGACAATAGTACAACAACTGACAGCAGCGTCAAGAAAAAGTCGACAAGTGCTGgtgtcgctgttgctgttgctgttgaggCTACTGATAAACGCAAAAACATGCCATCAAGTATAGAGTTGAAGCAAAAAGAAGATGTAGAAattacagaaacaacaacaacaacagattcATATTGTCCCATAACACCAAGATGTATAGTTGATGTCgctgatgacgatgataatGAAGATGCAACCGATTTCAAGATGCCGCAACGTTCCAATTTGTCAAAGACACAGAGTAGCAGTGAAGTTGTAGATAAGGCGCCGAGTGCAATGACTGCAGTCGATGCAAACGCTTCTGCTAACGCATCTGGTACTACGCACGATGGCGAAGATGACTATTATGATGATGAAGAGGATGAGCCTGACGATGAATTGATTGTGCAATTCTTGGGAGAAGCAAATCATATTgCAGAAGCAAGATTGGCCGCTCGAAGACAGGCGCGTGCTGAAGCGCGTGAAATACGCATGCGCGAACTGGAGCGTcaacaaaaagaacaagaacAGAATGCAGATCGCGTATTTGATATGCACACCGCATCTGGTATTGATCCTCTTTCACGATCACGTCTCACTGCAGGTATTGGTGTTAGTTCGCCGGTTGGTGGAGGGCTATTGAATTCGGTACGCGGTAGTTCAATGTCATCACGGCGCAGTAGTGAAGACTCACTTGAAGAGGAGGGGCGCAGTTTAAGAGATATACGTCATGAGCTtaaggATGTTGAGGAAAGGTTTCGCAAAGCAATGATTGCTAATGCCCAGCTGGATAATGAACGTGCCTCACAAACGTATCAAATACAGTTGCTCAAAGATAAACTTGAGGAGATCGAGGAATCCTATGCGCAGCTACAGCGTGAATACAAGGAGAAATCACGTGATTGCAATGCACTGAAACGTAATATCGACAAGTTGAACGAGGAACTGAAACTTGTGCAGGGCCAGTTGAGTGAAAGAGATGCACTTATAGCTGAACAGGGTCTAGTAATTGTTGCGGTAGAAAATGAAGATGGCACCGATGCAAAACGTGCTCTAGTCAGTTTAGAGAATGCACAGCTATTAGGTTCTGTGCAAGGCTCCTTAGATGTTCGACTCAAAAAATTCAGCGAAGAGAAGCAACAACTAATGGCTGAAGTGCAAAAACTACAAGACCAATTAGAAAATCATAAAAGTCAAGGCAAAGGTCGCGGCAATTCAATGAACGGTCCATCGGGATCTGATGAGGATTACGAAGCTCAGCGTGAGGCAAACAAAATCATATCGGACTTCAAGTATAAATTGCAAAAGGCTGAACAGGAAATTGCTAGTCTACAGGCCAGCTTAGCACGTTCAGAGACGCAAGTAATACGTTACAAGAGCACAGCAGAAGCAGCTGAAAAAGCGGAAGCTGAATTGAAAATAGAACGGAGAAAACTGCAAAGAGAGAATCGTGAAACCATGGAGCGCTTAGAAGAACTTGAAACATCAAACAATCACCTGCTTAAACGATTAGATAAACTAAAGAATGCAAAGAGTGCGTTGCTTAAGGATCTTTGA
- Protein Sequence
- MDSTGAVGRRRVNSRVNAEDQALDQIAKEEPQQEVMSEEEVTKKKVEEEENNNKVNKTTTTSLNKNTNDNHNNDDEIIEEFDFSDSDLNALNENGDNSNNNTGNVIDEVNATRVGSASATADNVSIVDNKGSHSHVNETTKDIPSTEKCITNLSQIAESIVDDNSTTTDSSVKKKSTSAGVAVAVAVEATDKRKNMPSSIELKQKEDVEITETTTTTDSYCPITPRCIVDVADDDDNEDATDFKMPQRSNLSKTQSSSEVVDKAPSAMTAVDANASANASGTTHDGEDDYYDDEEDEPDDELIVQFLGEANHIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHTASGIDPLSRSRLTAGIGVSSPVGGGLLNSVRGSSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEEIEESYAQLQREYKEKSRDCNALKRNIDKLNEELKLVQGQLSERDALIAEQGLVIVAVENEDGTDAKRALVSLENAQLLGSVQGSLDVRLKKFSEEKQQLMAEVQKLQDQLENHKSQGKGRGNSMNGPSGSDEDYEAQREANKIISDFKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENRETMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01470508;
- 90% Identity
- -
- 80% Identity
- -