Plon028960.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachydiplax longipennis
Gene Symbol
-
Assembly
GCA_036926295.1
Location
JAVFKF010000008.1:26938189-26964305[+]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.4 1.8e+04 -2.3 0.0 7 23 183 199 181 206 0.75
2 2 9.9e-19 1.3e-14 55.8 0.0 6 76 1018 1088 1013 1089 0.91

Sequence Information

Coding Sequence
ATGGAAAAAGAAATCGAAGTGTTATTTGGTTATAGAAAGAGCGTATTTTTCCTCAATCCCTTGAGCTTCTCTAGCCTCTGCGACGCATTTAGCCGAGAAAGGGATTTGAAGGAGAGAAAGGGTCCTCCCTTTTTTGCAATCGCAGGGCTTTTAGCGAACCTTTTAGCACGGATCCCCGCACTTGGTTCGTTTCATACCGACTGCGCGATCCGCCATTTGGAAGATTGTCAGCCGATGGGATTTGGGTACAAGAGATGGATTCTCGCTGAAGGAATCGCCGGACCCCAGGCGACGAGTAGCAACCGGATTAAATCTTATAACCCTAAGGATATTCGCTTATCATTATTGCATTGCACCAGCGAAGGAAAAAGCGCGAAAGTGGGACTCTCTTGGAATAATTTTCGCATGTACGAGCAGCTGCTGGGGGTGTTGAATGGACTGGTAGCTGCCGGCGCCGAAACGCCTTGCGCTGGACGTCCGTGCGCCACTTCAGTTCTATCATTTCAGACGCCTCGTGCCTTCTTACCCTTTTGCTGCTCTTCTCTAGATGATCGTTCTTTAGCCGCAGGGTGGCGGCCTCACATGGAACAGGAAGAGAGCGATGGCGGGAAGGTGGAGCGCGCAGAGAGCAAGAGCGGGGGAAAGGGAGTGCACGGATCGGCCGCCGCTGCTTCCAACGCCAacgccgccgccgccgccgcTGCTGCTGCAGCCGCTCAGCTCCTCGACGCCGCCGGCCTTTTCGCCTACTGGCCACGGAGTGAAGCCTCCTCGGCTGCACCTGGAGCCTCTTCCTCTCATCCATTATTTGGCGGAGCGGGAGGCGGTGCAGCAGCTCCATCCTCTTTTGCAAACCACCATCTAGCTCACTTGCCCCCAGCAGCATATGCAATGATGGGTCGCCATCCTCCAGCTCCCACCTTTGGTGTCCCACCACCTCCAGCTGCACCAGCGTATGGGTCACTGGGAACCCTTGGAGTAGCTGCAGGTCAAGCTGCCTCTCTGGGTATCAATCCAGCTAGTGCAGCTTGGTGGACCATGGCATCTCATTTAGCAGCACAGGACTACCTGGCTCGCCTGCAGGCTTCTGGTGGTCTACCATTTGGAGGTCTACCTGGGGATAGTCCAGTCCCTGCCTTTGACCTTCTTTCCCCTCATACAAGCCAACCACAAACACAACCACCCTCAAAGTCATCCTCAAGTGGGCAGAAATCGTCCAAGTCATCTTCGAGTCGACCACCATCGAGAGCTGGGGGAAGGACTGCGCCAACGCCTCCTACATCCTTAGCGGGTCCAACCTCGTCAGCTCCTCCTCCTCCACTGcctccacctcctcctcctcGGCTTCCGCAGCCAGCACATCCGATGCCACTAACCTCCACAGCCAGTATAGCATCATCTACTGCTACCACAACTGGGATAGTCAGTGCTCCATGCGAGGGAGGCGACCCATCCAGCATTCTTGGAGGAGTTCGCCTGCCCCCTGACACAGAGATCATCAAATATACATCATCTATAGTGGGTCCTAAGGTGCCTGGCACTACCAACAGGGGGCGAAAGAAGACCATCTCCCTGGATCCGCCGTCGGTGACAGTGGTGCCCACGACGGGAGGTGTGGCTCTCCTACCCCCACCTCCTCCTCCTCACCATCTACCTGCACATCTTCCTCCCTCACCCCATTTTCCACCTCACCATCCCATCCCAGGCCATCTTCCTCAAGGCCGTCCCCTTCTCCCTCCTCCTCCATCGTCATCTCCTGCGGCAGCCCCCAGTGTTGGCCAGTCTGCTGAGAGGAGGAGGAGTTCAGGCTCTACCAGTGGTGCCGGACGTCACGCGGATCCTGAGTTCCCACCCCTTTCGGCTGTGCAACCAATGGATAGAGTGGAGGTGATTAGACTACCACCACATGGAATTGGAGCTGTGGCCGATCCAAGAAGTGGTGATGCAGCTCTACGTAACATCCGTGGTCATGCTCCTCCCCCATCTCCACATCCTCCTGCCCCTGCCCACAACACGAGTCGTCGTCATGGCTCTTCAACCCTTGACTCCGTCCCTTTCCCTCCATCTGCATCTCCCACTCCTCCATCTCCTAGACCTGATATTGATGCTCCACTCAACCTCTCTCTCAAGTCTCAGCGGACACCCACTGCGCCTCCTGCTGGCCCAGAACCCCCAGTTTGCTCTTCACCACCAAGGGGTCCAGTCCTCCttgatctctctctctctggctCTCAGCAATCTTCCCAAGGAGCACCACCTAGGCCGCGTCCACCCCCTGTGGGACAACCATCCTCTATACCTGGGGAACCTAGGATTTCTCGGCGTAAACCTGGGCCTAGACCTCGAAGAGTGATACAAACTCATCCTTCAACATCACCATTGGCACCAGTGCCTCTGACTGCACAGGTTGTTTCAACTTCCCCATTGCTGCCATCAACTGGCCTTACCTCCTGTCCTAAGGCAGAGTCTCCTGGACGGTCTGATGATAGTGACATGGGGACCAAAGAGAGCCGTCCTCCCAGAAACCTTGGACGTGGAGTTTCCAAGCCGAAGAAGAACACAGTTGCATCTCTTCTTGCACAGAGCCGTGCTCTTGGAGTCAAACCTACAGTTGCTAGCTTAGAGAGGGGTGTTTCTCCAGTAAGACCTTCTCTCTCTAGACAAGGTGAAGGTTCAGGAGACAGTATGCATGGAGTTTTGGGAGAAACTTCATCCGGTGAAGTGCAAATGGGAGAGAGCAGTACACCAACTTCTTTGTGTACCAAAGACATGACACCCGAGGATCTTAGGGATGGAGCATCATCAAGAGATGGGGAGGGAGTCTCTTCACCAAAAGTGAAGTCAGATGAGGGGCCAAAGGGATCTGAAGGCTATGCTGCCAGTGTAATAAGTTTCCATACTTCAGATTCTGAGGATGATGATGAGGATCAAGAGAAAAGATCAGGAGGTGGAGGTGAAGGTGGTGAAGGAGTAGGAAATGACAGTGGGGGTCCTTCTGCAAAGAGACGCAGAGTCTGGAGTGGTACAGAAGGATCTATTCCAGATGAGCTCAAGCTTCGCATCCCACTAGAAAGAGGTTGGCTTCGAGAGACTGTGATCAGAGGTTTGAGCCGCAAGGGGCAAATTCGAGGTGAAGTCACCTATGTCTCTCCATGCGGTCATCGTTTCACTCAACACCAGGAAATAATTGGGtaCCTGGAGAAGAATGGAAATGTTGACCTCACCAAAGATCACTTTTCCTTCAACTCCAAGTTATTGATGGGAGATTTCCTGCAGCCCATGGGTGCAATCACACCTGGTGGAAATGAAGAATGCCTTCGGCTCTCTGAAGTTGAAGTTGCAAGGAGAATTGAAGAGTTGCGCCTGTCTCGTCCTTGGATGCCTAATACACAAAGAAGGCCAAGTGAGTGTTCTGTAAATGCTCGATCAGAAGAGGATTTGCAACATGTTCGGTCAGATCCTAGGGAAGCACATCTTCAGCCAAGGGATCATGGACCATCCCATCCTGGAGAGAGGGAGAGGCAAGCTATGTTAGCACGAGAAGCAAAGCGTCTTGCGCGGGAAGAAGTTCAGAGGCAAAGAGAACAAGCTAGATTAGCGAAAGAACAAGAAAAGCTTGAGAGGCAAGAAGCTGCACGCAGGGAAAGAGAGCTTAGAGCTCAGCAAGCAATGGAGGTAATGCCATCATTACTATGA
Protein Sequence
MEKEIEVLFGYRKSVFFLNPLSFSSLCDAFSRERDLKERKGPPFFAIAGLLANLLARIPALGSFHTDCAIRHLEDCQPMGFGYKRWILAEGIAGPQATSSNRIKSYNPKDIRLSLLHCTSEGKSAKVGLSWNNFRMYEQLLGVLNGLVAAGAETPCAGRPCATSVLSFQTPRAFLPFCCSSLDDRSLAAGWRPHMEQEESDGGKVERAESKSGGKGVHGSAAAASNANAAAAAAAAAAAQLLDAAGLFAYWPRSEASSAAPGASSSHPLFGGAGGGAAAPSSFANHHLAHLPPAAYAMMGRHPPAPTFGVPPPPAAPAYGSLGTLGVAAGQAASLGINPASAAWWTMASHLAAQDYLARLQASGGLPFGGLPGDSPVPAFDLLSPHTSQPQTQPPSKSSSSGQKSSKSSSSRPPSRAGGRTAPTPPTSLAGPTSSAPPPPLPPPPPPRLPQPAHPMPLTSTASIASSTATTTGIVSAPCEGGDPSSILGGVRLPPDTEIIKYTSSIVGPKVPGTTNRGRKKTISLDPPSVTVVPTTGGVALLPPPPPPHHLPAHLPPSPHFPPHHPIPGHLPQGRPLLPPPPSSSPAAAPSVGQSAERRRSSGSTSGAGRHADPEFPPLSAVQPMDRVEVIRLPPHGIGAVADPRSGDAALRNIRGHAPPPSPHPPAPAHNTSRRHGSSTLDSVPFPPSASPTPPSPRPDIDAPLNLSLKSQRTPTAPPAGPEPPVCSSPPRGPVLLDLSLSGSQQSSQGAPPRPRPPPVGQPSSIPGEPRISRRKPGPRPRRVIQTHPSTSPLAPVPLTAQVVSTSPLLPSTGLTSCPKAESPGRSDDSDMGTKESRPPRNLGRGVSKPKKNTVASLLAQSRALGVKPTVASLERGVSPVRPSLSRQGEGSGDSMHGVLGETSSGEVQMGESSTPTSLCTKDMTPEDLRDGASSRDGEGVSSPKVKSDEGPKGSEGYAASVISFHTSDSEDDDEDQEKRSGGGGEGGEGVGNDSGGPSAKRRRVWSGTEGSIPDELKLRIPLERGWLRETVIRGLSRKGQIRGEVTYVSPCGHRFTQHQEIIGYLEKNGNVDLTKDHFSFNSKLLMGDFLQPMGAITPGGNEECLRLSEVEVARRIEELRLSRPWMPNTQRRPSECSVNARSEEDLQHVRSDPREAHLQPRDHGPSHPGERERQAMLAREAKRLAREEVQRQREQARLAKEQEKLERQEAARRERELRAQQAMEVMPSLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01504697;
90% Identity
iTF_01384727;
80% Identity
-