Psmy012461.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachycephus smyrnensis
Gene Symbol
nfxl1
Assembly
GCA_030142225.1
Location
JARQST010000668.1:337582-340306[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.1 1.1e+04 -3.2 1.1 15 19 126 130 125 130 0.81
2 18 0.14 1.5e+03 -0.5 0.8 4 10 161 167 160 167 0.95
3 18 6.3e-08 0.00063 19.9 16.9 1 19 175 192 175 192 0.99
4 18 0.00028 2.9 8.2 14.3 1 19 228 246 222 246 0.93
5 18 0.28 2.8e+03 -1.4 0.3 5 10 270 275 270 277 0.89
6 18 0.052 5.3e+02 0.9 12.0 1 19 281 300 281 300 0.91
7 18 0.0012 12 6.2 12.7 1 18 336 353 336 354 0.97
8 18 0.0034 34 4.7 8.0 1 12 388 399 388 399 0.94
9 18 0.81 8.1e+03 -2.9 0.8 6 10 409 413 408 413 0.91
10 18 7.9e-08 0.0008 19.5 14.0 1 19 419 437 419 437 0.93
11 18 0.41 4.1e+03 -1.9 1.0 5 10 465 470 465 470 0.95
12 18 0.00011 1.1 9.5 7.6 9 19 485 495 483 495 0.90
13 18 9.7e-05 0.98 9.7 5.3 1 11 505 514 505 515 0.95
14 18 0.85 8.6e+03 -2.9 5.8 14 18 547 551 547 552 0.89
15 18 0.00043 4.3 7.6 7.6 1 12 588 599 578 599 0.93
16 18 2 2e+04 -5.5 2.8 6 7 615 616 611 619 0.50
17 18 0.0036 36 4.7 14.9 3 19 628 644 627 644 0.94
18 18 5.9e-05 0.6 10.4 13.6 1 16 689 703 689 708 0.95

Sequence Information

Coding Sequence
ATGAAGAAGTTTAAGCGGGCTCAGGCCCAAAATCAAGCTTCTATAGAGAGGCATCTGGAAGCTAATAATTTGATAGAATCCTCCAGTGAGGAAGATGATGATGGAAATGAAGAACTTCTTCAGAAAGCAGTTGGCAAGGTTTTGTCTTCGTATCAGTACGAAGGAGGAGATGCTGAAAAGGCACTTTCTTACCTGATAGACACTTTCCAATCTGGCGGAGCAGTGTGCCTGATTTGTATTTCAACTGTAAAGAAAACAGATGCGATTTGGAATTGCAGCAAGTGCTATTCTTTTATGCATTTGCCTTGCATTCAACATTGGATTCGGGATAGTCTTAGTTATAAACATGACAAGGGCATCACTCCTCTATGGGCTTGtcCAAAATGTCGAATGGAATATCCTGAAGATGAAGTTCCAAAGCATTACGAGTGCTTTTGTGGAAGAACAAGGGATCCATCGTATCTGCCTTGGTCAATTCCACATTCTTGTGGAGAAACATGCAGTAAATTATTACAGCCAAAATGTGGTCATCGATGTGTCCTTCTCTGCCATCCTGGACCTTGTCCGCCATGCCCAAAGATGGTATCATCAAAGTGTTACTGTGGCAAGCAACCAGCACGACCGCGTCGATGCAACGCCAAAGAATGGAGCTGTGGAAACATTTGTGGCAAGAAATTAAAATGCACTCAGCATAATTGTCAAATAGAATGTCATGCCAATGAGTGTCCACCATGTTCAGAAACAATTTTGATTGCCTGTCACTGTGGCAACAAGAAAGAGGCTCGAAAATGCAATGAGGCTTCCTGGACTTGTGATAAACCTTGTGGTAATCGTCTCTCCTGCAACGTGCACGTGTGTCAAGGTGTTTGCCATCGTCCAGATGACTGTGGTGAATGTCCTATTGAACGAAACAGAAGCTGCCCATGCGGCAAGACACGGTACATCATATCTTGCAAGCAGGAACAAGTACCCACATGCGGTGATACCTGTGGCAAACTTCTCAATTGCGGATCGCACTATTGCAATATGCGATGCCATACTGAACACTGTGGCCAGTGTCTCGAAGTGGTAACGAAGATTTGTCGCTGCGGTGCTTACAAGAAGGAACTCGCCTGCGCCAAGACTTTTCACTGTGACACCAAATGTAAGCAGATGCGTCTCTGTGGAAGACATCCGTGCAACAAGAAATGTTGTGACTGCCTAATAAAGAACAACTTTAATGCATGTGAGAAGATCTGTGATCGCACTCTGAATTGCAGGAAGCATAAATGCGCAGCTCCTTGTCACAGTGGACCCTGTTACCCATGCCCACGGACGGATGTGAGACAGTGTCGTTGTGGAAAAAGCAAGATCACCGTTCCCTGTGGTACTGCAAAGAAGATCAAGCCGCCTACTTGCAATAAACTCTGCAAGATTCCACCGATTTGTCATCACCCAAAAAGGGAGTCGCACAAATGTCATCAAGGTGCCTGTCCACCGTGTCGCAAAGTTTGTGGACTCACGCACAAGAAATGTGGGCATACGTGTCCAGCGATTTGCCATGCGAAAGTCTGGGTCAAGATTAAAGTAAATGGTGTGAATAGCCAGCCTGCAGGACCCTGGGACAGACCTCAAGAGAAGATGCAATTGAAGACACTGCCGTGTCCGCCGTGCGAAGTTTCTATGATGGTGACCTGCTTGGGAGGTCATGAGACAAAACCCTGGCCGTGTCATACGGCAGTGCCCACATCTTGCTTAAGACTGTGTGGACAACTGTTGACCTGCACGAATCATTACTGCGAACGACTTTGTCATAAGTTACGATCATCTGGTGATACTGGGGATGATGCAGACTGCGAGGAATGCGAGCGAGAATGCGCTTTCCCCAGACCTAAAGGTTGCAATCATCCCTGCAAGAAAAGTTGTCATCCTGCACCCTGCGACAATTGCAAGCAGCTTGTCAAGGTATCCTGTCATTGTGGAATTAACTCACTGTTTAAAAGATGCTTTGAATTGACATCTGCGACTACAGAACAAAAGAACGAGATGCTCAAATGTGGAAACCAATGCCCTCGAATTtatCCATGTGGTCATCGTTGCATCGACAATTGCCACCCTGGAGAGTGCCAAGGTGCCAGTGGATGCAACAAAAAGGTGAAACTGTACTGCAAGTGTAAGCGCATTAAGAAGGACTTCTCTTGTGTATTAGTGCGGTTCAATAAGGCGCTTGTCGAATGCGACAACATCTGccaggagaaaaaagaagaacgcaAAAGAGCTCAGGAACTAGAGATGGAGAAAAAACGTAGGGAAGACGAAATTAGAAACCAAAAGGAGATTGAACAGTTTGAAAggaaatttgttaagtcaaaaCGAAAGGGCAAGGACAAAATCCCAATGGAAGACTTAAAGAAGGATGGGAGGCGCATGtggacaaatattttccagGTAGTAACAGTGATAATATTAGTAGCTGGTCTGACAATTTATACAGCAATAACCAATTAA
Protein Sequence
MKKFKRAQAQNQASIERHLEANNLIESSSEEDDDGNEELLQKAVGKVLSSYQYEGGDAEKALSYLIDTFQSGGAVCLICISTVKKTDAIWNCSKCYSFMHLPCIQHWIRDSLSYKHDKGITPLWACPKCRMEYPEDEVPKHYECFCGRTRDPSYLPWSIPHSCGETCSKLLQPKCGHRCVLLCHPGPCPPCPKMVSSKCYCGKQPARPRRCNAKEWSCGNICGKKLKCTQHNCQIECHANECPPCSETILIACHCGNKKEARKCNEASWTCDKPCGNRLSCNVHVCQGVCHRPDDCGECPIERNRSCPCGKTRYIISCKQEQVPTCGDTCGKLLNCGSHYCNMRCHTEHCGQCLEVVTKICRCGAYKKELACAKTFHCDTKCKQMRLCGRHPCNKKCCDCLIKNNFNACEKICDRTLNCRKHKCAAPCHSGPCYPCPRTDVRQCRCGKSKITVPCGTAKKIKPPTCNKLCKIPPICHHPKRESHKCHQGACPPCRKVCGLTHKKCGHTCPAICHAKVWVKIKVNGVNSQPAGPWDRPQEKMQLKTLPCPPCEVSMMVTCLGGHETKPWPCHTAVPTSCLRLCGQLLTCTNHYCERLCHKLRSSGDTGDDADCEECERECAFPRPKGCNHPCKKSCHPAPCDNCKQLVKVSCHCGINSLFKRCFELTSATTEQKNEMLKCGNQCPRIYPCGHRCIDNCHPGECQGASGCNKKVKLYCKCKRIKKDFSCVLVRFNKALVECDNICQEKKEERKRAQELEMEKKRREDEIRNQKEIEQFERKFVKSKRKGKDKIPMEDLKKDGRRMWTNIFQVVTVIILVAGLTIYTAITN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00291971;
90% Identity
iTF_00770786;
80% Identity
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