Psmy009853.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- tfip11_1
- Assembly
- GCA_030142225.1
- Location
- JARQST010000513.1:293322-296332[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-95 5.3e-91 305.2 12.9 1 275 413 681 413 681 0.98 2 2 0.0075 75 2.9 0.2 243 273 694 724 687 726 0.84
Sequence Information
- Coding Sequence
- ATGTCTGAGGACGAGGTTGAGAGTTTTGAAATTACTGATTATGACTTGGACAATGAATTTAACATTAACAGACCTCGACGAAAACTGTCTAAGAAGCAGCAGATGCTTGGCATCTGGGCTGATGACAGCGATGAGGAAGAAGTCCCTGCAAGACCATCGTTCAAATCCTATGACAAAGGTCCTAAAAATTATACAGCTCCAGTTAGTTTTGTTGCTGGAGGCATTCAGCAAGCTGGTAAACCAAAAGAGGAGCAGACTAATGAAGATGCCaaggatgatgataatgacgacgatgatgatgatgagaatGAACGTGATGATCGGAGAGGATCTAGAAGAAGAGAGTTTACATTGAATTCATCAAGTGATTCCGATACTGGAACCCCTACGGATAGTCGATCGAGAGCTCAACAACCAAGTTTCTTAACAAACTTAGACAGTGATGTAGCAGGATTGAGAAGAAAGAAGCCTCCGATCAATCCTCTGTTGATGAAGAGTGGAGTTGGCAGTTGGGAAGTACATACCAAGGGTATCGGAGCAAAGCTTTTGCTAAGAATGGGTTTTGAACCTGGCAAAGGATTGGGTAAACAGTTGCAAGGAATAAGTGCTCCAGTAGAGGCTCACTTGAGAAAAGGTAGAGGAGCAATTGGTGCATATGGGCCGGAGAAAGTTCCAAAGGTgccagagaagaaaaaagatgaagacaTCGAAGAAGCTAAGGCCTTCAAAGCTAAATTATCACAGTGGCGAAAGAGTGGTGAGGCTGGTGCAACTAGTAGCAAGAAACTGTCTCGTTATGTTTATCGAAGTGTGGACCAGGTACTGGAAGATGGAAAATCAAAACCAGAGAGAAAAGTTCCTACGAGCAGTGAGATTAGTCGAGTGAAAGTGATAGACATGACAGGACCAGAGTGTCGTGTGTTGAGTGGATATCATGCCATAGCTGGTGGACAACGGCGTCCTGACGAAGGAACACTCACCATCGATAGCAAGACCAGACTAAACTTCTCACTGCCAGAATTACAGCATAACCTCGACCTCCTAGTGGACATGTGTGAACAGGATATTATTAGAAATGACAGAAGAACCAGATATCTTAATGATCGTGTAATTGCCCTTGAGGCGGAGAACAAAACTCTGACAAAGGTTGTTGATAGACATGGACAACTCATCGATACCTTAGAAAATGTCTTGGCTGTTGTCGACAGATTAACTAATAACTCCAATGATCTCTCCCTTGAAGAAATCGCAACAACTTTTAGAAACTTGCAAGATTCTTACTACgaagaatataaaatgtatgaaCTAGGAGAACTGGCTGGCAGTTTAGTCAGTGTTAAAGTCAAGGAGAAGTTAGCTACTTGGAACCCTCTTATAAATCCCAAGGAGTATATTGAGGTATTTAGTGAATGGAAGGACATTTTGGAAGCTGGAAGAGGAACCCTGATCCACTCGCAGACGATGCATCCTTACGACAGACTTATATGGACTGCATGGATGCCATCAATTCGTGGTGCAGTACAACAGTGGGCTTGTAAACAACCAGATCCTTTGATTGAACTCATAGAATATTGGATACCCTTACTTCCTGGttggattttggaaaatataattgaccTCCTAGTCTTACCTAAACTGACTTTAGAAGTCGAAGAATGGAATCCATTAACAGATACTGTACCGATCCACACTTGGATCCATCCCTGGCTTCCACTGATGCGTAATCGTTTGGATTCTGTGGTCTACCCCATAATCCGGAGAAAACTTGGTTCAGCAATGGGTGGTTGGCACCCATCTGACAGATCAGCTAGATTGATGCTGCAACCCTGGGTTGAAGTATTTGACAAGGGTGACATGCAAGCTTTCCTGGTGAAGAATATAATACCAAAACTGGAGGACGCGTTGTTACAACTAGAGATAAATCCTCATCAGCAGCATCTTGACAAATGGAATTGGGTCTATGAATGGAGGGAAATGTTATCGGTCCATGCAATGGCTGGACTGCTCGACAACCAATTCTTCCCCAAATGGCTACGTGCCTTGGCAATTTGGTTGAGTCACATGCCAAGTTACGAACAAGTTATTAAATGGTATATGGGATGGAAGAGTATGCTGAGTGATAAGTTATTAGAAGAACCTAGGATCAAAGaACACTTTAAAAAGGCCCTGGATATGATAAGGAATACTCTAGTCGAACCTCAAGCTCGACCACCAGGACCAATCGAGCAGGTTTCTTATATGACGAATTTAGATCAAATGCCCTCCATGTCCCAGATACCAACAATGGCGCAGCAAAGATTTGTACCTCTTCCACGAACCATCACGCAGACTCTTAGAGAGTACAAAGATTTTGTACAGGACAAATGTGAAGAGCGCGGTATACTCTTCATGCCTATTCCAAATAGATATAGAGATGACAAACAAGTATACAAACTAGGAAACGTACAAGCATATATCGACGGAGAAATGCTCTTTGTATCTCGTGGGAGTGGAACCTGGGCACCAGCACAATTAAATACCATCCTGGACATGGCAGAACTTTGA
- Protein Sequence
- MSEDEVESFEITDYDLDNEFNINRPRRKLSKKQQMLGIWADDSDEEEVPARPSFKSYDKGPKNYTAPVSFVAGGIQQAGKPKEEQTNEDAKDDDNDDDDDDENERDDRRGSRRREFTLNSSSDSDTGTPTDSRSRAQQPSFLTNLDSDVAGLRRKKPPINPLLMKSGVGSWEVHTKGIGAKLLLRMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKVPKVPEKKKDEDIEEAKAFKAKLSQWRKSGEAGATSSKKLSRYVYRSVDQVLEDGKSKPERKVPTSSEISRVKVIDMTGPECRVLSGYHAIAGGQRRPDEGTLTIDSKTRLNFSLPELQHNLDLLVDMCEQDIIRNDRRTRYLNDRVIALEAENKTLTKVVDRHGQLIDTLENVLAVVDRLTNNSNDLSLEEIATTFRNLQDSYYEEYKMYELGELAGSLVSVKVKEKLATWNPLINPKEYIEVFSEWKDILEAGRGTLIHSQTMHPYDRLIWTAWMPSIRGAVQQWACKQPDPLIELIEYWIPLLPGWILENIIDLLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLMRNRLDSVVYPIIRRKLGSAMGGWHPSDRSARLMLQPWVEVFDKGDMQAFLVKNIIPKLEDALLQLEINPHQQHLDKWNWVYEWREMLSVHAMAGLLDNQFFPKWLRALAIWLSHMPSYEQVIKWYMGWKSMLSDKLLEEPRIKEHFKKALDMIRNTLVEPQARPPGPIEQVSYMTNLDQMPSMSQIPTMAQQRFVPLPRTITQTLREYKDFVQDKCEERGILFMPIPNRYRDDKQVYKLGNVQAYIDGEMLFVSRGSGTWAPAQLNTILDMAEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00252066; iTF_01473922; iTF_00298307; iTF_00255077; iTF_01198661; iTF_00296776; iTF_01199401; iTF_00292266; iTF_00294474; iTF_00296011; iTF_00297547; iTF_00295244; iTF_00252813; iTF_00291533; iTF_00292943; iTF_01395120; iTF_00254321; iTF_00293717; iTF_01473175; iTF_01475447; iTF_00253563; iTF_01474684; iTF_00770368;
- 90% Identity
- iTF_01473922; iTF_00296776; iTF_00294474; iTF_00296011; iTF_00295244; iTF_00292943; iTF_01473175; iTF_01475447; iTF_00298307; iTF_01198661; iTF_00292266; iTF_00297547; iTF_00252813; iTF_00255077; iTF_01395120; iTF_00254321; iTF_00252066; iTF_00293717; iTF_00291533; iTF_01474684; iTF_00253563; iTF_00770368; iTF_01199401;
- 80% Identity
- -