Hnig009547.1
Basic Information
- Insect
- Hartigia nigra
- Gene Symbol
- tfip11
- Assembly
- GCA_031001745.1
- Location
- JARPRG010000480.1:204710-207684[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-95 4.3e-91 305.3 13.3 1 275 407 675 407 675 0.98 2 2 0.029 2.6e+02 1.0 0.2 243 272 688 717 681 720 0.80
Sequence Information
- Coding Sequence
- ATGTCTGAGGACGAAGTTGAGAGTTTTGAAATTACGGATTATGACTTGGAAAATGAATTCAACATTAATAGACCACGACGAAAACTGTCTAAAAAGCAGCAGATGCTTGGCATCTGGGCTGATGACAGCGATGAGGAAGAAGTTCCTCCAAGACCATCTTTCAAATCGTATGCTAAAGGtccaaaaaattatacagctCCTGTTAATTTTGTTGCTGGAGGCATTCAACAAGCTGGTAAACCAAAGGAGGAACAAACTAATAAAGATGCgaaggatgatgatgatgaggatgaaCATGATGATCAGAGAGGATCTAGAAGACGAGAGTTTACATTGAATTCATCAAGTGATTCCGATACTGGAACCCCTACAGAAAGTCGATCAAGAGCTCAACAACCAagtttcttaataaatttagaCAGTGATGTAGCAGGattgagaagaaagaaacCTCCAATCAATCCTCTGTTGATGAAGAGTGGAGTTGGCAGTTGGGAAGTACATACTAAGGGTATTGGAGCAAAACTTTTGCTACAGATGGGTTTTGAACCTGGTAAAGGATTGGGTAAACAGTTGCAAGGAATAAGTGCTCCGGTAGAGGCTCATTTAAGAAAAGGTAGAGGAGCAATTGGTGCGTATGGGCCAGAGAAAGTGGCAAAAGTtccagagaagaaaaaggatgagGACGTCGAAGAAGCTAAGGCCTTCAAAGCTAAATTATCTCAGTGGAGAAAGGGTGGTGAAGCTGGTGCTACTAGTAGCAAAAAACGGTCTCGTTATGTTTATCGAAGTGTGGACCAGGTACTAGAAGATGGAAAATCAAaaccagaaagaaaatttcctaCGAAGAATGAGATTAGTAGAGTGAAAGTGATAGACATGACGGGACCAGAGTGTCGTGTATTGAGTGGATATCATGCCATAGCTGGTGGACAGCGACGTCCTGATGAAGGAACACTTACCACGGATAGCAAGACCAGGTTAAATTTCTCATTGCCAGAATTACAGCATAATCTCGACCTCCTAGTGGATATGTGTGAACAGGATATTATTAGAAATGACAGAAGAACCAGATATCTTAATGATCGTGTAATTGCTCTTGAGGCTGAGAACAAAACTCTGACAAAGGTGGTTGATCGACATGGGCAACTCATTGACACCTTAGAAAATGTCTTGGCTGTTGTCGATAAACTAACCGATAACTCCAATGATCTCTCCCTTAAAGAAACCGCAGAAGCTTTTAGAAACTTGCAAGACACTTACtacgaagaatataaaatgtatgaaCTAGGAGAACTTGCTGGCAGTTTAGTCAGTGTTAAAGTTAAGGATAAGTTAGCTACTTGGAACCCTCTTGTGAATCCTAAGGAATATATTGAGATATTCAGCGAATGGAAGGACATTTTGGAAACTGGAAGAGGAACCCTCATCCACTCTCAGACAATGCATCCTTACGACAGACTGATATGGACTGCATGGATGCCATCAATTCGTGGTGCAGTACAACAGTGGGCTTGCAAACAACCAGACCCTTTGATTGAACTCATAGAATATTGGATACCTCTACTTCCTGGTtggattttggaaaatataattgaccTCCTAGTGTTACCTAAACTGACTTTAGAAGTCGAAGAATGGAATCCATTAACAGATACTGTACCAATCCACACCTGGATCCATCCCTGGCTTCCACTGATGCGTAATCGTTTGGATTCTCTTATCTATCCGATAATCCGGAGAAAGCTTGGTTCAGCGATGGGTGGTTGGCATCCATCTGACAGATCAGCTAGATTGATGCTGCAACCCTGGGTTGAAGTATTCGACAAGGGTGATATGCAAGCTTTCCTGGTGAAGAATATAATACCAAAGCTAGAGGACGCGTTATTACAGCTAGAAATAAATCCTCATCAGCAGCATCTGGATAAATGGAATTGGGTCTATGAATGGAAGGAAATGTTATCAGTCCATGCAATGGCTGGGTTGCTTGACAACCAATTCTTTCCTAAATGGCTACGTGCCTTGGCGATTTGGTTGAGTCACATGCCAAGTTATGAACAAGTTATTAAATGGTATATGGGATGGAAGAGTATGCTGAATGAAAAGTTGTTAGATGAACCAAGGATCAAAGAGCACTTTAAAAAGGCTCTGGAGATGATAAGGAGTGCTCTAGTTGAACCCCAAGCTCGACCACCAGGACCAATTGAACAGGTTCCTTATATGACGAATTTAGATCAAATGCCATCCATGTCTCAGATACCAGCGATGGCGCAACAAAGATTTGTACCACTTCCACGAACCATCACGCAGACTGCTAGAGATTACAAAGATTTTGTACAGGACAAATGTGAAGAGCGTGGTATACTCTTCATGCCTATTCCAAATAGATATAGAGATGACAAACAAGTATACAAACTCGGAAACGTGCAAGCATATATTGACGGAGAAATGCTCTTTGTATCTCGTGGAACTGGAACATGGGCACCGATACAATTGAATGCCATCCTGGACATGGCAGAACTTTGA
- Protein Sequence
- MSEDEVESFEITDYDLENEFNINRPRRKLSKKQQMLGIWADDSDEEEVPPRPSFKSYAKGPKNYTAPVNFVAGGIQQAGKPKEEQTNKDAKDDDDEDEHDDQRGSRRREFTLNSSSDSDTGTPTESRSRAQQPSFLINLDSDVAGLRRKKPPINPLLMKSGVGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHLRKGRGAIGAYGPEKVAKVPEKKKDEDVEEAKAFKAKLSQWRKGGEAGATSSKKRSRYVYRSVDQVLEDGKSKPERKFPTKNEISRVKVIDMTGPECRVLSGYHAIAGGQRRPDEGTLTTDSKTRLNFSLPELQHNLDLLVDMCEQDIIRNDRRTRYLNDRVIALEAENKTLTKVVDRHGQLIDTLENVLAVVDKLTDNSNDLSLKETAEAFRNLQDTYYEEYKMYELGELAGSLVSVKVKDKLATWNPLVNPKEYIEIFSEWKDILETGRGTLIHSQTMHPYDRLIWTAWMPSIRGAVQQWACKQPDPLIELIEYWIPLLPGWILENIIDLLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLMRNRLDSLIYPIIRRKLGSAMGGWHPSDRSARLMLQPWVEVFDKGDMQAFLVKNIIPKLEDALLQLEINPHQQHLDKWNWVYEWKEMLSVHAMAGLLDNQFFPKWLRALAIWLSHMPSYEQVIKWYMGWKSMLNEKLLDEPRIKEHFKKALEMIRSALVEPQARPPGPIEQVPYMTNLDQMPSMSQIPAMAQQRFVPLPRTITQTARDYKDFVQDKCEERGILFMPIPNRYRDDKQVYKLGNVQAYIDGEMLFVSRGTGTWAPIQLNAILDMAEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01130810;
- 90% Identity
- iTF_01130810;
- 80% Identity
- iTF_01199401;